KEGG   PATHWAY: yfr00240
Entry
yfr00240                    Pathway                                
Name
Pyrimidine metabolism - Yersinia frederiksenii
Class
Metabolism; Nucleotide metabolism
Pathway map
yfr00240  Pyrimidine metabolism
yfr00240

Module
yfr_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:yfr00240]
yfr_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:yfr00240]
yfr_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:yfr00240]
yfr_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:yfr00240]
Other DBs
GO: 0006220 0006213
Organism
Yersinia frederiksenii [GN:yfr]
Gene
AW19_3964  carB; carbamoyl-phosphate synthase large chain [KO:K01955] [EC:6.3.5.5]
AW19_3963  carA; carbamoyl-phosphate synthase small chain [KO:K01956] [EC:6.3.5.5]
AW19_2783  pyrB; aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
AW19_2784  pyrI; aspartate carbamoyltransferase, regulatory subunit [KO:K00610]
AW19_1596  pyrC; dihydroorotase, homodimeric type [KO:K01465] [EC:3.5.2.3]
AW19_2794  amidohydrolase family protein [KO:K01465] [EC:3.5.2.3]
AW19_1666  pyrD; dihydroorotate dehydrogenase [KO:K00254] [EC:1.3.5.2]
AW19_3147  pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
AW19_1176  pyrF; orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
AW19_2264  pyrH; UMP kinase [KO:K09903] [EC:2.7.4.22]
AW19_211  ndk; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
AW19_4081  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
AW19_2815  maf; septum formation protein Maf [KO:K06287] [EC:3.6.1.-]
AW19_2703  hypothetical protein [KO:K07043] [EC:3.6.1.-]
AW19_4082  pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2]
AW19_1692  cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.25]
AW19_1095  nudG; CTP pyrophosphohydrolase [KO:K08320] [EC:3.6.1.65]
AW19_669  udk; uridine kinase [KO:K00876] [EC:2.7.1.48]
AW19_2041  ushA; protein UshA [KO:K11751] [EC:3.1.3.5 3.6.1.45]
AW19_4107  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
AW19_475  HAD hydrolase, IA, variant 1 family protein [KO:K02566] [EC:3.1.3.5]
AW19_1272  HAD hydrolase, IA, variant 1 family protein [KO:K08723] [EC:3.1.3.-]
AW19_2953  udp; uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
AW19_2149  hypothetical protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
AW19_311  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
AW19_519  hypothetical protein [KO:K01119] [EC:3.1.4.16 3.1.3.6]
AW19_3774  cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
AW19_2167  psuK; pseudouridine kinase [KO:K16328] [EC:2.7.1.83]
AW19_2166  psuG; pseudouridine-5'-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
AW19_457  rihA; pyrimidine-specific ribonucleoside hydrolase rihA [KO:K01250] [EC:3.2.2.-]
AW19_2276  putative lysine decarboxylase family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
AW19_660  cdd; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
AW19_3495  codA; cytosine deaminase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
AW19_3847  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
AW19_670  dcd; deoxycytidine triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
AW19_84  ribonucleoside-diphosphate reductase, alpha subunit [KO:K00525] [EC:1.17.4.1]
AW19_1823  ribonucleoside-diphosphate reductase, alpha subunit [KO:K00525] [EC:1.17.4.1]
AW19_1824  nrdB; ribonucleoside-diphosphate reductase 1 subunit beta [KO:K00526] [EC:1.17.4.1]
AW19_83  ribonucleotide reductase, small chain family protein [KO:K00526] [EC:1.17.4.1]
AW19_1865  yfbR; 5'-nucleotidase yfbR [KO:K08722] [EC:3.1.3.89]
AW19_1580  tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
AW19_3145  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
AW19_3923  deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
AW19_1108  thymidine kinase family protein [KO:K00857] [EC:2.7.1.21]
AW19_2299  thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
AW19_1234  ydfG; NADP-dependent 3-hydroxy acid dehydrogenase YdfG [KO:K16066] [EC:1.1.1.381 1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
yfr00030  Pentose phosphate pathway
yfr00220  Arginine biosynthesis
yfr00250  Alanine, aspartate and glutamate metabolism
yfr00280  Valine, leucine and isoleucine degradation
yfr00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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