PATHWAY: yfr02010 Help
Entry
Name
ABC transporters - Yersinia frederiksenii
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
BRITE hierarchy
Pathway map
Ortholog table
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Organism
Yersinia frederiksenii [GN:
yfr ]
Gene
AW19_361 cysT; sulfate ABC transporter, permease protein CysT [KO:K02046 ]
AW19_362 cysW; sulfate ABC transporter, permease protein CysW [KO:K02047 ]
AW19_3512 tauA; taurine ABC transporter, periplasmic binding protein [KO:K15551 ]
AW19_3514 binding--dependent transport system inner membrane component family protein [KO:K15552 ]
AW19_2492 bacterial extracellular solute-binding s, 3 family protein [KO:K15553 ]
AW19_2490 binding--dependent transport system inner membrane component family protein [KO:K15554 ]
AW19_549 modA; molybdate ABC transporter, periplasmic molybdate-binding protein [KO:K02020 ]
AW19_550 modB; molybdate ABC transporter, permease protein [KO:K02018 ]
AW19_333 bacterial extracellular solute-binding family protein [KO:K02012 ]
AW19_334 binding--dependent transport system inner membrane component family protein [KO:K02011 ]
AW19_792 binding--dependent transport system inner membrane component family protein [KO:K02011 ]
AW19_411 binding--dependent transport system inner membrane component family protein [KO:K02011 ]
AW19_3984 thiB; thiamin/thiamine pyrophosphate ABC transporter, thiamin/thiamine pyrophospate-binding protein [KO:K02064 ]
AW19_3983 thiP; thiamine/thiamine pyrophosphate ABC transporter, permease protein [KO:K02063 ]
AW19_1737 binding--dependent transport system inner membrane component family protein [KO:K11074 ]
AW19_1738 potH; putrescine transport system permease protein PotH [KO:K11075 ]
AW19_80 proX; glycine betaine-binding periplasmic protein [KO:K02002 ]
AW19_81 binding--dependent transport system inner membrane component family protein [KO:K02001 ]
AW19_592 substrate binding domain of ABC-type glycine betaine transport system family protein [KO:K05845 ]
AW19_593 putative osmoprotectant uptake system permease protein yehY [KO:K05846 ]
AW19_595 putative osmoprotectant uptake system permease protein yehW [KO:K05846 ]
AW19_2870 binding--dependent transport system inner membrane component family protein [KO:K10109 ]
AW19_2871 binding--dependent transport system inner membrane component family protein [KO:K10110 ]
AW19_2868 malK; maltose/maltodextrin import ATP-binding protein MalK [KO:K10111 ] [EC:7.5.2.-]
AW19_1435 bacterial extracellular solute-binding family protein [KO:K10192 ]
AW19_1432 binding--dependent transport system inner membrane component family protein [KO:K10193 ]
AW19_1433 binding--dependent transport system inner membrane component family protein [KO:K10194 ]
AW19_2768 putative phospholipid ABC transporter-binding protein mlaD [KO:K02067 ]
AW19_2769 putative phospholipid ABC transporter permease protein mlaE [KO:K02066 ]
AW19_2766 putative phospholipid ABC transporter-binding protein mlaB [KO:K07122 ]
AW19_2770 putative phospholipid import ATP-binding protein MlaF [KO:K02065 ]
AW19_3245 branched-chain amino acid transport system / permease component family protein [KO:K10440 ]
AW19_639 branched-chain amino acid transport system / permease component family protein [KO:K10541 ]
AW19_3347 xylF; D-xylose ABC transporter, D-xylose-binding protein [KO:K10543 ]
AW19_3349 branched-chain amino acid transport system / permease component family protein [KO:K10544 ]
AW19_993 periplasmic binding s and sugar binding domain of LacI family protein [KO:K17213 ]
AW19_995 branched-chain amino acid transport system / permease component family protein [KO:K17214 ]
AW19_2963 bacterial extracellular solute-binding family protein [KO:K05813 ]
AW19_2962 binding--dependent transport system inner membrane component family protein [KO:K05814 ]
AW19_2961 binding--dependent transport system inner membrane component family protein [KO:K05815 ]
AW19_3270 pstC; phosphate ABC transporter, permease protein PstC [KO:K02037 ]
AW19_304 binding--dependent transport system inner membrane component family protein [KO:K02037 ]
AW19_3271 pstA; phosphate ABC transporter, permease protein PstA [KO:K02038 ]
AW19_305 pstA; phosphate ABC transporter, permease protein PstA [KO:K02038 ]
AW19_585 phnD; phosphonate ABC transporter, periplasmic phosphonate binding protein [KO:K02044 ]
AW19_586 phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042 ]
AW19_587 phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042 ]
AW19_1259 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein [KO:K10015 ]
AW19_1882 hisM; histidine transport system permease protein hisM [KO:K10015 ]
AW19_1883 hisQ; histidine transport system permease protein hisQ [KO:K10016 ]
AW19_1260 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein [KO:K10016 ]
AW19_1261 lysine-arginine-ornithine-binding periplasmic family protein [KO:K10014 ]
AW19_610 bacterial extracellular solute-binding s, 3 family protein [KO:K10036 ]
AW19_609 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein [KO:K10037 ]
AW19_1731 lysine-arginine-ornithine-binding periplasmic family protein [KO:K09997 ]
AW19_1733 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein [KO:K09998 ]
AW19_1732 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein [KO:K09999 ]
AW19_461 gltI; glutamate/aspartate periplasmic-binding protein [KO:K10001 ]
AW19_459 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein [KO:K10002 ]
AW19_460 amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein [KO:K10003 ]
AW19_902 bacterial extracellular solute-binding s, 3 family protein [KO:K02424 ]
AW19_903 yecS; inner membrane amino-acid ABC transporter permease protein yecS [KO:K10009 ]
AW19_19 amiC; N-acetylmuramoyl-L-alanine amidase AmiC [KO:K01999 ]
AW19_2973 livH; high-affinity branched-chain amino acid transport system permease protein livH [KO:K01997 ]
AW19_2972 branched-chain amino acid transport system / permease component family protein [KO:K01998 ]
AW19_2970 livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF [KO:K01996 ]
AW19_2234 metI; D-methionine transport system permease protein metI [KO:K02072 ]
AW19_3285 binding--dependent transport system inner membrane component family protein [KO:K02072 ]
AW19_1756 binding--dependent transport system inner membrane component family protein [KO:K02072 ]
AW19_2233 metN; D-methionine ABC transporter, ATP-binding protein [KO:K02071 ]
AW19_25 urea ABC transporter, substrate-binding protein [KO:K11959 ]
AW19_24 branched-chain amino acid transport system / permease component family protein [KO:K11960 ]
AW19_23 branched-chain amino acid transport system / permease component family protein [KO:K11961 ]
AW19_1115 oppB; oligopeptide transport system permease protein oppB [KO:K15581 ]
AW19_1116 oppC; oligopeptide transport system permease protein oppC [KO:K15582 ]
AW19_3372 bacterial extracellular solute-binding s, 5 Middle family protein [KO:K12368 ]
AW19_3373 binding--dependent transport system inner membrane component family protein [KO:K12369 ]
AW19_3374 dppC; dipeptide transport system permease protein dppC [KO:K12370 ]
AW19_1327 bacterial extracellular solute-binding s, 5 Middle family protein [KO:K19226 ]
AW19_1331 sapF; peptide transport system ATP-binding protein SapF [KO:K19230 ]
AW19_1787 bacterial extracellular solute-binding s, 5 Middle family protein [KO:K13893 ]
AW19_1788 yejB; inner membrane ABC transporter permease protein yejB [KO:K13894 ]
AW19_1789 yejE; inner membrane ABC transporter permease protein yejE [KO:K13895 ]
AW19_2621 fepD; ferric enterobactin transport system permease protein fepD [KO:K23186 ]
AW19_2620 fepG; ferric enterobactin transport system permease protein fepG [KO:K23187 ]
AW19_4069 fhuB; iron(3+)-hydroxamate import system permease protein fhuB [KO:K23228 ]
AW19_1043 znuB; high-affinity zinc uptake system membrane protein znuB [KO:K09816 ]
AW19_739 cbiQ; cobalt ABC transporter, permease protein CbiQ [KO:K02008 ]
AW19_740 cobalt ABC transporter, ATP-binding family protein [KO:K02006 ]
AW19_3886 branched-chain amino acid transport system / permease component family protein [KO:K10556 ]
AW19_3885 branched-chain amino acid transport system / permease component family protein [KO:K10557 ]
AW19_1557 lolE; liporeleasing system, transmembrane protein LolE [KO:K09808 ]
AW19_1559 lolC; lipo-releasing system transmembrane protein lolC [KO:K09808 ]
AW19_1558 lolD; liporeleasing system, ATP-binding protein [KO:K09810 ] [EC:7.6.2.-]
AW19_3860 lptF; lipopolysaccharide export system permease protein lptF [KO:K07091 ]
AW19_3861 lptG; lipopolysaccharide export system permease protein lptG [KO:K11720 ]
AW19_2086 mdlB; multidrug resistance-like ATP-binding protein MdlB [KO:K18890 ]
AW19_1717 macB; macrolide export ATP-binding/permease protein MacB [KO:K05685 ] [EC:7.6.2.-]
Compound
C00093 sn-Glycerol 3-phosphate
C01153 Orthophosphoric monoester
C01181 4-Trimethylammoniobutanoate
C01279 4-Amino-5-hydroxymethyl-2-methylpyrimidine
C03557 2-Aminoethylphosphonate
C03611 Galactose oligosaccharide
C03619 Methyl beta-D-galactoside
C04114 (E)-4-(Trimethylammonio)but-2-enoate
C06705 Capsular polysaccharide
C19872 N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570 alpha-1,5-L-Arabinobiose
C20571 alpha-1,5-L-Arabinotriose
C20572 alpha-1,5-L-Arabinotetraose
Reference
Authors
Tomii K, Kanehisa M.
Title
A comparative analysis of ABC transporters in complete microbial genomes.
Journal
Reference
Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
Journal
Reference
Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
Journal
Reference
Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
Journal
Reference
Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
Journal
Reference
Authors
Richard-Fogal CL, Frawley ER, Kranz RG
Title
Topology and function of CcmD in cytochrome c maturation.
Journal
Reference
Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
Journal
Reference
Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
Journal
Reference
Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
Journal
Reference
Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
Journal
KO pathway
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