KEGG   PATHWAY: yim00630
Entry
yim00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Yimella sp. cx-51
Class
Metabolism; Carbohydrate metabolism
Pathway map
yim00630  Glyoxylate and dicarboxylate metabolism
yim00630

Module
yim_M00012  Glyoxylate cycle [PATH:yim00630]
yim_M00621  Glycine cleavage system [PATH:yim00630]
Other DBs
GO: 0046487 0043648
Organism
Yimella sp. cx-51 [GN:yim]
Gene
J5M86_05005  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
J5M86_08690  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
J5M86_10625  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
J5M86_12135  malate synthase G [KO:K01638] [EC:2.3.3.9]
J5M86_05000  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
J5M86_03680  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J5M86_11195  citrate synthase [KO:K01647] [EC:2.3.3.1]
J5M86_08600  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
J5M86_12080  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
J5M86_03280  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
J5M86_10390  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
J5M86_10395  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
J5M86_04005  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
J5M86_04125  acyl-CoA carboxylase subunit beta [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
J5M86_03245  methylmalonyl-CoA mutase small subunit [KO:K01847] [EC:5.4.99.2]
J5M86_03250  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
J5M86_05675  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
J5M86_07870  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
J5M86_05670  FAD-binding oxidoreductase [KO:K11472] [EC:1.1.99.14]
J5M86_05665  4Fe-4S dicluster domain-containing protein [KO:K11473] [EC:1.1.99.14]
J5M86_14120  catalase [KO:K03781] [EC:1.11.1.6]
J5M86_06155  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
J5M86_09095  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
J5M86_00615  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
J5M86_10510  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
J5M86_07935  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
J5M86_09040  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
J5M86_06220  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J5M86_09055  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J5M86_07960  gcvH; glycine cleavage system protein GcvH [KO:K02437]
J5M86_13130  glycerate kinase [KO:K00865] [EC:2.7.1.165]
J5M86_08985  glycerate kinase [KO:K00865] [EC:2.7.1.165]
J5M86_10650  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
J5M86_00405  dehydrogenase [KO:K00123] [EC:1.17.1.9]
J5M86_00410  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
J5M86_00415  4Fe-4S dicluster domain-containing protein [KO:K00124]
J5M86_00640  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
J5M86_09425  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
yim00010  Glycolysis / Gluconeogenesis
yim00020  Citrate cycle (TCA cycle)
yim00030  Pentose phosphate pathway
yim00053  Ascorbate and aldarate metabolism
yim00071  Fatty acid degradation
yim00230  Purine metabolism
yim00250  Alanine, aspartate and glutamate metabolism
yim00260  Glycine, serine and threonine metabolism
yim00620  Pyruvate metabolism
yim00710  Carbon fixation by Calvin cycle
yim00750  Vitamin B6 metabolism
yim00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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