KEGG   PATHWAY: ypl00010
Entry
ypl00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Yersinia pestis El Dorado
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ypl00010  Glycolysis / Gluconeogenesis
ypl00010

Module
ypl_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:ypl00010]
ypl_M00002  Glycolysis, core module involving three-carbon compounds [PATH:ypl00010]
ypl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ypl00010]
ypl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ypl00010]
Other DBs
GO: 0006096 0006094
Organism
Yersinia pestis El Dorado [GN:ypl]
Gene
CH46_2130  glk; glucokinase [KO:K00845] [EC:2.7.1.2]
CH46_1369  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
CH46_837  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
CH46_1568  fructose-1-6-bisphosphatase family protein [KO:K03841] [EC:3.1.3.11]
CH46_825  glpX; fructose-1,6-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
CH46_1096  ketose-bisphosphate aldolase family protein [KO:K01624] [EC:4.1.2.13]
CH46_4227  fbaA; fructose-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
CH46_829  tpiA; triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
CH46_2956  gap; glyceraldehyde-3-phosphate dehydrogenase, type I [KO:K00134] [EC:1.2.1.12]
CH46_4226  phosphoglycerate kinase family protein [KO:K00927] [EC:2.7.2.3]
CH46_4000  gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
CH46_459  putative phosphoglycerate mutase gpmB [KO:K15634] [EC:5.4.2.11]
CH46_850  gpmI; phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
CH46_1713  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
CH46_2710  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
CH46_3047  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
CH46_2696  ppsA; phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
CH46_1671  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CH46_1672  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
CH46_1673  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CH46_1140  glucose inhibited division A family protein [KO:K00382] [EC:1.8.1.4]
CH46_2773  nifJ; ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
CH46_3624  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
CH46_2932  adhE; aldehyde-alcohol dehydrogenase [KO:K04072] [EC:1.2.1.10 1.1.1.1]
CH46_661  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CH46_3998  galM; galactose mutarotase [KO:K01785] [EC:5.1.3.3]
CH46_887  HAD hydrolase, IA, variant 3 family protein [KO:K20866] [EC:3.1.3.10]
CH46_2423  pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
CH46_2957  aldose 1-epimerase family protein [KO:K01792] [EC:5.1.3.15]
CH46_778  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CH46_747  4 glycosyl hydrolase family protein [KO:K01222] [EC:3.2.1.86]
CH46_750  hypothetical protein [KO:K01222] [EC:3.2.1.86]
CH46_3874  glycosyl hydrolase 1 family protein [KO:K01223] [EC:3.2.1.86]
CH46_2107  crr; glucose-specific phosphotransferase enzyme IIA component [KO:K02777] [EC:2.7.1.-]
CH46_3516  ptsG; PTS system glucose-specific EIICB component [KO:K02779] [EC:2.7.1.199]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ypl00020  Citrate cycle (TCA cycle)
ypl00030  Pentose phosphate pathway
ypl00500  Starch and sucrose metabolism
ypl00620  Pyruvate metabolism
ypl00640  Propanoate metabolism
KO pathway
ko00010   
LinkDB

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