KEGG   PATHWAY: ypr00030
Entry
ypr00030                    Pathway                                
Name
Pentose phosphate pathway - Yersinia pseudotuberculosis EP2/+
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ypr00030  Pentose phosphate pathway
ypr00030

Module
ypr_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ypr00030]
ypr_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ypr00030]
ypr_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ypr00030]
ypr_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ypr00030]
ypr_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:ypr00030]
ypr_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:ypr00030]
ypr_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:ypr00030]
Other DBs
GO: 0006098
Organism
Yersinia pseudotuberculosis EP2/+ [GN:ypr]
Gene
BZ20_2458  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
BZ20_63  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BZ20_814  lactonase, 7-bladed beta-propeller family protein [KO:K07404] [EC:3.1.1.31]
BZ20_411  gnd; 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BZ20_2349  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
BZ20_1241  hypothetical protein [KO:K00615] [EC:2.2.1.1]
BZ20_1242  hypothetical protein [KO:K00615] [EC:2.2.1.1]
BZ20_2998  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
BZ20_1489  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
BZ20_657  rpiA; ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
BZ20_3006  rpiA; ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
BZ20_1278  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
BZ20_1517  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
BZ20_625  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
BZ20_2507  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
BZ20_2506  phosphomethylpyrimidine kinase family protein [KO:K00852] [EC:2.7.1.15]
BZ20_2117  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
BZ20_1515  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
BZ20_3249  pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
BZ20_1597  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
BZ20_112  prs; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
BZ20_3644  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
BZ20_61  eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BZ20_2177  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BZ20_2297  carbohydrate kinase, thermoresistant glucokinase family protein [KO:K00851] [EC:2.7.1.12]
BZ20_3637  carbohydrate kinase, thermoresistant glucokinase family protein [KO:K00851] [EC:2.7.1.12]
BZ20_2261  pfkB carbohydrate kinase family protein [KO:K00874] [EC:2.7.1.45]
BZ20_2290  ketose-bisphosphate aldolase family protein [KO:K01624] [EC:4.1.2.13]
BZ20_3001  fbaA; fructose-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
BZ20_1652  fructose-1-6-bisphosphatase family protein [KO:K03841] [EC:3.1.3.11]
BZ20_2036  glpX; fructose-1,6-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
BZ20_2048  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ypr00010  Glycolysis / Gluconeogenesis
ypr00040  Pentose and glucuronate interconversions
ypr00052  Galactose metabolism
ypr00230  Purine metabolism
ypr00240  Pyrimidine metabolism
ypr00340  Histidine metabolism
ypr00630  Glyoxylate and dicarboxylate metabolism
ypr00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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