KEGG   PATHWAY: zce00020
Entry
zce00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Zerene cesonia (dogface butterfly)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
zce00020  Citrate cycle (TCA cycle)
zce00020

Module
zce_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:zce00020]
zce_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:zce00020]
Other DBs
GO: 0006099
Organism
Zerene cesonia (dogface butterfly) [GN:zce]
Gene
119835464  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
119838899  probable ATP-citrate synthase subunit 1 [KO:K01648] [EC:2.3.3.8]
119832153  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
119839254  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
119834943  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
119830552  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
119837851  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
119838244  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
119839168  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
119834888  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
119831015  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
119828700  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
119839292  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
119828888  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
119829877  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119829992  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119835753  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
119839896  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
119837257  succinate dehydrogenase iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
119837853  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
119834024  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
119835754  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
119828656  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
119833098  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
119834232  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119834286  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
119830935  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
119833351  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
119833401  probable malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
119833557  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
119832818  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
119836887  phosphoenolpyruvate carboxykinase [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
119837314  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
119838263  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
119839970  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
zce00010  Glycolysis / Gluconeogenesis
zce00053  Ascorbate and aldarate metabolism
zce00061  Fatty acid biosynthesis
zce00062  Fatty acid elongation
zce00071  Fatty acid degradation
zce00190  Oxidative phosphorylation
zce00220  Arginine biosynthesis
zce00250  Alanine, aspartate and glutamate metabolism
zce00280  Valine, leucine and isoleucine degradation
zce00350  Tyrosine metabolism
zce00470  D-Amino acid metabolism
zce00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system