KEGG   PATHWAY: zne00020
Entry
zne00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Zootermopsis nevadensis (dampwood termite)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
zne00020  Citrate cycle (TCA cycle)
zne00020

Module
zne_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:zne00020]
zne_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:zne00020]
zne_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:zne00020]
zne_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:zne00020]
zne_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:zne00020]
Other DBs
GO: 0006099
Organism
Zootermopsis nevadensis (dampwood termite) [GN:zne]
Gene
110826638  probable citrate synthase 2, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
110840288  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
110830891  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
110836367  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
110839946  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
110830514  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
110834411  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
110839897  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
110834848  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
110836386  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
110831320  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
110838023  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
110840781  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
110837315  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
110836680  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
110832439  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
110839351  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
110831963  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110831154  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110840631  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
110826970  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
110831845  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
110830762  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
110828080  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
110834552  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
110840229  LOW QUALITY PROTEIN: malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
110826695  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
110829146  phosphoenolpyruvate carboxykinase [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
110832677  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
110834014  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
110828908  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
110830426  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
110840336  pyruvate dehydrogenase protein X component-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
zne00010  Glycolysis / Gluconeogenesis
zne00053  Ascorbate and aldarate metabolism
zne00061  Fatty acid biosynthesis
zne00062  Fatty acid elongation
zne00071  Fatty acid degradation
zne00190  Oxidative phosphorylation
zne00220  Arginine biosynthesis
zne00250  Alanine, aspartate and glutamate metabolism
zne00280  Valine, leucine and isoleucine degradation
zne00350  Tyrosine metabolism
zne00470  D-Amino acid metabolism
zne00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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