KEGG   PATHWAY: zsp00020
Entry
zsp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Zhouia spongiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
zsp00020  Citrate cycle (TCA cycle)
zsp00020

Module
zsp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:zsp00020]
zsp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:zsp00020]
zsp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:zsp00020]
zsp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:zsp00020]
zsp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:zsp00020]
Other DBs
GO: 0006099
Organism
Zhouia spongiae [GN:zsp]
Gene
MQE36_08860  citrate synthase [KO:K01647] [EC:2.3.3.1]
MQE36_09975  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MQE36_15250  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MQE36_02975  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MQE36_00700  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
MQE36_02970  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MQE36_15490  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MQE36_16625  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MQE36_13740  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MQE36_10715  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MQE36_04715  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MQE36_04720  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MQE36_04710  succinate dehydrogenase cytochrome b subunit [KO:K00241]
MQE36_12960  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MQE36_09230  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MQE36_03885  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MQE36_08155  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MQE36_02045  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MQE36_08160  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
zsp00010  Glycolysis / Gluconeogenesis
zsp00053  Ascorbate and aldarate metabolism
zsp00061  Fatty acid biosynthesis
zsp00071  Fatty acid degradation
zsp00190  Oxidative phosphorylation
zsp00220  Arginine biosynthesis
zsp00250  Alanine, aspartate and glutamate metabolism
zsp00280  Valine, leucine and isoleucine degradation
zsp00350  Tyrosine metabolism
zsp00470  D-Amino acid metabolism
zsp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system