KEGG   PATHWAY: pca00020
Entry
pca00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Syntrophotalea carbinolica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pca00020  Citrate cycle (TCA cycle)
pca00020

Module
pca_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pca00020]
pca_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pca00020]
pca_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pca00020]
pca_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pca00020]
pca_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pca00020]
Other DBs
GO: 0006099
Organism
Syntrophotalea carbinolica [GN:pca]
Gene
Pcar_1991  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
Pcar_2450  aconitate hydratase, putative [KO:K01681] [EC:4.2.1.3]
Pcar_2165  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Pcar_1038  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Pcar_0575  isocitrate/isopropylmalate dehydrogenase superfamily protein [KO:K00030] [EC:1.1.1.41]
Pcar_2940  sucA; 2-oxoglutarate dehydrogenase, E1 protein [KO:K00164] [EC:1.2.4.2]
Pcar_2941  sucB; 2-oxoglutarate dehydrogenase, E2 protein, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Pcar_1486  lpdA-2; dihydrolipoamide dehydrogenase, putative [KO:K00382] [EC:1.8.1.4]
Pcar_0347  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pcar_1030  korA; 2-oxoglutarate:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Pcar_1545  vorA; 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Pcar_1029  korB; 2-oxoglutarate:ferredoxin oxidoreductase, thiamin diphosphate-binding subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Pcar_1546  vorB; 2-oxoacid:ferredoxin oxidoreductase, thiamin diphosphate-binding subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Pcar_1547  vorC; 2-oxoacid:ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Pcar_1028  korC; 2-oxoglutarate:ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Pcar_1031  korD; 2-oxoglutarate:ferredoxin oxidoreductase, ferredoxin subunit [KO:K00176] [EC:1.2.7.3]
Pcar_1544  vorD; 2-oxoacid:ferredoxin oxidoreductase, ferredoxin subunit [KO:K00176] [EC:1.2.7.3]
Pcar_2248  2-oxoacid:ferredoxin oxidoreductase, ferredoxin subunit [KO:K00176] [EC:1.2.7.3]
Pcar_0246  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Pcar_0247  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Pcar_0445  frdA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Pcar_0444  frdB; succinate dehydrogenase/fumarate reductase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Pcar_0446  frdC; succinate dehydrogenase/fumarate reductase, cytochrome b558 subunit [KO:K00241]
Pcar_0324  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Pcar_1037  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Pcar_1957  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Pcar_1766  pckA; phosphoenolpyruvate carboxykinase, GTP-dependent [KO:K01596] [EC:4.1.1.32]
Pcar_0345  acoC; acetoin dehydrogenase complex, E2 protein, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Pcar_1239  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Pcar_1240  2-oxoacid:ferredoxin oxidoreductase, thiamin diphosphate-binding subunit [KO:K00170] [EC:1.2.7.1]
Pcar_1238  2-oxoacid:ferredoxin oxidoreductase, gamma and ferredoxin subunit [KO:K00172] [EC:1.2.7.1]
Pcar_1034  por-2; pyruvate:ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Pcar_0377  por-1; pyruvate:ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pca00010  Glycolysis / Gluconeogenesis
pca00053  Ascorbate and aldarate metabolism
pca00061  Fatty acid biosynthesis
pca00071  Fatty acid degradation
pca00190  Oxidative phosphorylation
pca00220  Arginine biosynthesis
pca00250  Alanine, aspartate and glutamate metabolism
pca00280  Valine, leucine and isoleucine degradation
pca00350  Tyrosine metabolism
pca00470  D-Amino acid metabolism
pca00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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