KEGG   PATHWAY: pcad00515
Entry
pcad00515                   Pathway                                
Name
Mannose type O-glycan biosynthesis - Physeter macrocephalus (sperm whale)
Description
Biosynthesis of mammalian O-mannosyl glycans is initiated by the transfer of mannose from mannose-P-Dol to serine or threonine residue, followed by extensions with N-acetylglucosamine (GlcNAc) and galactose (Gal) to generate core M1, M2 and M3 glycans. Core M1 and M2 glycans can then be further attached by fucose residues, sialic acid terminals and sulfatded glucuroinc acid terminals. Core M3 glycan is involved in the synthesis of alpha-dystroglycan, a heavily glycosylated protein found in muscle and brain tissues. Core M3 glycan contains a tandem repeat of ribitol 5-phosphate (Rbo5P) and -alpha3-GlcA-beta3-Xyl- repeating structures. Defects of genes encoding core glycans and modified core M3 glycans are associated with various congenital diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
pcad00515  Mannose type O-glycan biosynthesis
pcad00515

Other DBs
GO: 0035269
Organism
Physeter macrocephalus (sperm whale) [GN:pcad]
Gene
102973659  RXYLT1; ribitol-5-phosphate xylosyltransferase 1 isoform X1 [KO:K21052] [EC:2.4.2.61]
102973887  CRPPA; D-ribitol-5-phosphate cytidylyltransferase isoform X1 [KO:K21031] [EC:2.7.7.40]
102975408  FKRP; ribitol 5-phosphate transferase FKRP [KO:K19873] [EC:2.7.8.-]
102976527  POMGNT1; protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1 [KO:K09666] [EC:2.4.1.-]
102976716  B3GALNT2; UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2 isoform X1 [KO:K09654] [EC:2.4.1.313]
102979593  [KO:K21052] [EC:2.4.2.61]
102980809  B3GAT1; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X6 [KO:K00735] [EC:2.4.1.135]
102981095  POMT2; protein O-mannosyl-transferase 2 [KO:K00728] [EC:2.4.1.109]
102981888  B4GALT1; beta-1,4-galactosyltransferase 1 isoform X1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
102983361  FUT4; alpha-(1,3)-fucosyltransferase 4 [KO:K07632] [EC:2.4.1.-]
102983477  MGAT5B; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B [KO:K09661] [EC:2.4.1.-]
102984482  B3GAT2; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 isoform X2 [KO:K10157] [EC:2.4.1.135]
102986256  B4GAT1; beta-1,4-glucuronyltransferase 1 [KO:K21032] [EC:2.4.1.-]
102986436  LARGE2; xylosyl- and glucuronyltransferase LARGE2 isoform X1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
102989838  ST3GAL3; CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X1 [KO:K00781] [EC:2.4.3.6]
102989855  LARGE1; xylosyl- and glucuronyltransferase LARGE1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
102990521  POMGNT2; protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 [KO:K18207] [EC:2.4.1.312]
102990717  CHST10; carbohydrate sulfotransferase 10 isoform X2 [KO:K09674] [EC:2.8.2.-]
102991108  B4GALT2; beta-1,4-galactosyltransferase 2 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
102991770  B4GALT3; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
102992811  FKTN; ribitol-5-phosphate transferase FKTN isoform X2 [KO:K19872] [EC:2.7.8.-]
102993317  FUT9; 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 [KO:K03663] [EC:2.4.1.152]
102994817  POMT1; protein O-mannosyl-transferase 1 isoform X7 [KO:K00728] [EC:2.4.1.109]
102996084  POMK; protein O-mannose kinase isoform X3 [KO:K17547] [EC:2.7.1.183]
Compound
C00063  CTP
C00789  CDP-ribitol
C01068  D-Ribitol 5-phosphate
C02189  [Protein]-L-serine
G10617  Dolichyl phosphate D-mannose
G13026  
G13027  
G13028  
G13082  
G13083  
G13084  O-Mannose core M1
G13085  
G13086  O-Mannose core M2
G13087  
G13088  
G13089  
G13090  
G13091  O-mannose core M3
G13092  Phospho-core M3
G13093  
G13094  
G13095  
G13096  
G13097  
G13098  
G13099  
G13100  
Reference
  Authors
Praissman JL, Wells L
  Title
Mammalian O-mannosylation pathway: glycan structures, enzymes, and protein substrates.
  Journal
Biochemistry 53:3066-78 (2014)
DOI:10.1021/bi500153y
Reference
  Authors
Stalnaker SH, Stuart R, Wells L
  Title
Mammalian O-mannosylation: unsolved questions of structure/function.
  Journal
Curr Opin Struct Biol 21:603-9 (2011)
DOI:10.1016/j.sbi.2011.09.001
Reference
  Authors
Kanagawa M, Kobayashi K, Tajiri M, Manya H, Kuga A, Yamaguchi Y, Akasaka-Manya K, Furukawa J, Mizuno M, Kawakami H, Shinohara Y, Wada Y, Endo T, Toda T
  Title
Identification of a Post-translational Modification with Ribitol-Phosphate and Its Defect in Muscular Dystrophy.
  Journal
Cell Rep 14:2209-23 (2016)
DOI:10.1016/j.celrep.2016.02.017
Reference
  Authors
Manya H, Yamaguchi Y, Kanagawa M, Kobayashi K, Tajiri M, Akasaka-Manya K, Kawakami H, Mizuno M, Wada Y, Toda T, Endo T
  Title
The Muscular Dystrophy Gene TMEM5 Encodes a Ribitol beta1,4-Xylosyltransferase Required for the Functional Glycosylation of Dystroglycan.
  Journal
J Biol Chem 291:24618-24627 (2016)
DOI:10.1074/jbc.M116.751917
Related
pathway
pcad00510  N-Glycan biosynthesis
KO pathway
ko00515   

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