KEGG   PATHWAY: pcad03030
Entry
pcad03030                   Pathway                                
Name
DNA replication - Physeter macrocephalus (sperm whale)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
pcad03030  DNA replication
pcad03030

Organism
Physeter macrocephalus (sperm whale) [GN:pcad]
Gene
102973407  RPA2; replication protein A 32 kDa subunit isoform X1 [KO:K10739]
102973620  POLA1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
102973892  RPA3; replication protein A 14 kDa subunit isoform X1 [KO:K10740]
102974317  RNASEH2B; ribonuclease H2 subunit B isoform X5 [KO:K10744]
102974488  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
102974664  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
102975526  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
102975600  MCM5; DNA replication licensing factor MCM5 isoform X1 [KO:K02209] [EC:5.6.2.3]
102975663  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
102975920  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
102976284  RPA1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
102976987  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
102977443  POLD3; DNA polymerase delta subunit 3 isoform X3 [KO:K03504]
102978355  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
102979240  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
102980166  [KO:K04802]
102980467  RFC5; replication factor C subunit 5 [KO:K10756]
102980871  RFC2; replication factor C subunit 2 [KO:K10755]
102981829  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X1 [KO:K03111]
102982946  POLD1; DNA polymerase delta catalytic subunit isoform X1 [KO:K02327] [EC:2.7.7.7]
102983114  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
102983674  POLE4; DNA polymerase epsilon subunit 4 isoform X3 [KO:K03506] [EC:2.7.7.7]
102984273  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
102985271  POLA2; DNA polymerase alpha subunit B isoform X3 [KO:K02321]
102986298  [KO:K10744]
102986727  POLE; DNA polymerase epsilon catalytic subunit A isoform X4 [KO:K02324] [EC:2.7.7.7]
102987455  [KO:K10739]
102987713  RFC4; replication factor C subunit 4 [KO:K10755]
102987882  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
102988491  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
102988701  MCM6; DNA replication licensing factor MCM6 isoform X1 [KO:K02542] [EC:5.6.2.3]
102988942  SLC25A16; solute carrier family 25 member 16 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
102989305  [KO:K03506] [EC:2.7.7.7]
102989678  RNASEH1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
102989998  RFC3; replication factor C subunit 3 isoform X2 [KO:K10756]
102990379  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
102992318  PCNA; proliferating cell nuclear antigen [KO:K04802]
102993378  RNASEH2A; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
102994060  PRIM2; DNA primase large subunit isoform X1 [KO:K02685]
102995487  [KO:K02685]
102996166  RPA4; replication protein A 30 kDa subunit [KO:K10741]
112061949  [KO:K02328]
114485382  [KO:K10755]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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