KEGG   PATHWAY: pcam00020
Entry
pcam00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas campi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcam00020  Citrate cycle (TCA cycle)
pcam00020

Module
pcam_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pcam00020]
pcam_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcam00020]
pcam_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcam00020]
pcam_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcam00020]
pcam_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcam00020]
Other DBs
GO: 0006099
Organism
Pseudomonas campi [GN:pcam]
Gene
HNE05_07230  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HNE05_07135  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HNE05_05745  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HNE05_09115  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HNE05_08800  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HNE05_07255  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HNE05_07260  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HNE05_04205  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HNE05_07265  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HNE05_08995  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HNE05_07275  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HNE05_07270  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HNE05_07245  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HNE05_07250  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HNE05_07235  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HNE05_07240  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HNE05_03485  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HNE05_04595  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HNE05_12985  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HNE05_18425  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
HNE05_18430  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
HNE05_16940  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HNE05_15430  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HNE05_15435  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcam00010  Glycolysis / Gluconeogenesis
pcam00061  Fatty acid biosynthesis
pcam00071  Fatty acid degradation
pcam00190  Oxidative phosphorylation
pcam00220  Arginine biosynthesis
pcam00250  Alanine, aspartate and glutamate metabolism
pcam00280  Valine, leucine and isoleucine degradation
pcam00350  Tyrosine metabolism
pcam00470  D-Amino acid metabolism
pcam00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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