KEGG   PATHWAY: pcf00020
Entry
pcf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Polistes canadensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pcf00020  Citrate cycle (TCA cycle)
pcf00020

Module
pcf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pcf00020]
pcf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pcf00020]
pcf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pcf00020]
pcf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pcf00020]
pcf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pcf00020]
Other DBs
GO: 0006099
Organism
Polistes canadensis [GN:pcf]
Gene
106788830  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
106785699  probable citrate synthase 2, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
106788484  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
106791048  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
106789177  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
106785117  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
106788430  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
106791771  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
106790443  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
106792077  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
106787931  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
106786681  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
106786365  succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
106788935  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106785934  uncharacterized protein LOC106785934 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
106791181  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
106791198  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
106793088  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
106793398  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
106784771  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
106786811  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
106784098  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
106788153  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
106783717  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
106787964  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
106793632  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
106785501  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
106785082  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
106783622  phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
106793131  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
106793527  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
106787417  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
106790492  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
106788596  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
106791631  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pcf00010  Glycolysis / Gluconeogenesis
pcf00053  Ascorbate and aldarate metabolism
pcf00061  Fatty acid biosynthesis
pcf00062  Fatty acid elongation
pcf00071  Fatty acid degradation
pcf00190  Oxidative phosphorylation
pcf00220  Arginine biosynthesis
pcf00250  Alanine, aspartate and glutamate metabolism
pcf00280  Valine, leucine and isoleucine degradation
pcf00350  Tyrosine metabolism
pcf00470  D-Amino acid metabolism
pcf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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