KEGG   PATHWAY: peh00030
Entry
peh00030                    Pathway                                
Name
Pentose phosphate pathway - Planctopirus ephydatiae
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
peh00030  Pentose phosphate pathway
peh00030

Module
peh_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:peh00030]
peh_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:peh00030]
peh_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:peh00030]
peh_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:peh00030]
Other DBs
GO: 0006098
Organism
Planctopirus ephydatiae [GN:peh]
Gene
Spb1_05590  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Spb1_18620  zwf; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Spb1_02590  pgl; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
Spb1_30730  gndA; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Spb1_14330  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Spb1_11130  dxs_1; 1-deoxy-D-xylulose-5-phosphate synthase [KO:K00615] [EC:2.2.1.1]
Spb1_11140  tktB; Transketolase 2 [KO:K00615] [EC:2.2.1.1]
Spb1_03260  tal; Transaldolase [KO:K00616] [EC:2.2.1.2]
Spb1_33650  ywlF; Putative sugar phosphate isomerase YwlF [KO:K01808] [EC:5.3.1.6]
Spb1_34550  rpiB; Ribose-5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
Spb1_31120  rbsK; Ribokinase [KO:K00852] [EC:2.7.1.15]
Spb1_21090  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
Spb1_00620  pgcA; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
Spb1_03100  algC_1; Phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Spb1_12240  prs_2; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Spb1_06860  prs_1; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Spb1_28790  kdgA; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Spb1_39090  ycdF; Glucose 1-dehydrogenase 2 [KO:K00034] [EC:1.1.1.47]
Spb1_21850  tdh_2; L-threonine 3-dehydrogenase [KO:K22969] [EC:1.1.1.47]
Spb1_05770  adhT; Alcohol dehydrogenase [KO:K22969] [EC:1.1.1.47]
Spb1_28030  HEAT repeat protein [KO:K00117] [EC:1.1.5.2]
Spb1_04860  gnl_1; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Spb1_29380  gnl_2; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Spb1_29160  kdgK_1; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
Spb1_40570  kdgK_2; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
Spb1_26760  ttuD; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Spb1_29310  fba; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
Spb1_24160  glpX; Fructose-1,6-bisphosphatase class 2 [KO:K02446] [EC:3.1.3.11]
Spb1_08320  pfp_1; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Spb1_33820  pfp_2; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Spb1_34390  pfkA; 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
peh00010  Glycolysis / Gluconeogenesis
peh00040  Pentose and glucuronate interconversions
peh00052  Galactose metabolism
peh00230  Purine metabolism
peh00240  Pyrimidine metabolism
peh00340  Histidine metabolism
peh00630  Glyoxylate and dicarboxylate metabolism
peh00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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