KEGG   PATHWAY: pfa00020
Entry
pfa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Plasmodium falciparum 3D7
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfa00020  Citrate cycle (TCA cycle)
pfa00020

Module
pfa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfa00020]
pfa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfa00020]
Other DBs
GO: 0006099
Organism
Plasmodium falciparum 3D7 [GN:pfa]
Gene
PF3D7_1022500  citrate synthase, mitochondrial, putative [KO:K01647] [EC:2.3.3.1]
PF3D7_1342100  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PF3D7_1345700  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
PF3D7_0820700  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PF3D7_1320800  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
PF3D7_1232200  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
PF3D7_0815900  dihydrolipoyl dehydrogenase, apicoplast [KO:K00382] [EC:1.8.1.4]
PF3D7_1108500  succinyl-CoA synthetase alpha subunit, putative [KO:K01899] [EC:6.2.1.4 6.2.1.5]
PF3D7_1431600  succinyl-CoA ligase [ADP-forming] subunit beta, putative [KO:K01900] [EC:6.2.1.4 6.2.1.5]
PF3D7_1034400  flavoprotein subunit of succinate dehydrogenase [KO:K00234] [EC:1.3.5.1]
PF3D7_1212800  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
PF3D7_0927300  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PF3D7_0616800  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PF3D7_1342800  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PF3D7_1124500  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PF3D7_1446400  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
PF3D7_1020800  dihydrolipoamide acyltransferase component E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfa00010  Glycolysis / Gluconeogenesis
pfa00061  Fatty acid biosynthesis
pfa00062  Fatty acid elongation
pfa00071  Fatty acid degradation
pfa00190  Oxidative phosphorylation
pfa00220  Arginine biosynthesis
pfa00250  Alanine, aspartate and glutamate metabolism
pfa00280  Valine, leucine and isoleucine degradation
pfa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system