KEGG   PATHWAY: pfer00470
Entry
pfer00470                   Pathway                                
Name
D-Amino acid metabolism - Paludibaculum fermentans
Class
Metabolism; Metabolism of other amino acids
Pathway map
pfer00470  D-Amino acid metabolism
pfer00470

Other DBs
GO: 0046416
Organism
Paludibaculum fermentans [GN:pfer]
Gene
IRI77_23815  alr; alanine racemase [KO:K01775] [EC:5.1.1.1]
IRI77_22945  D-alanine--D-alanine ligase [KO:K01921] [EC:6.3.2.4]
IRI77_20185  acyl carrier protein [KO:K14188] [EC:6.1.1.13]
IRI77_27320  purQ; phosphoribosylformylglycinamidine synthase subunit PurQ [KO:K23265] [EC:6.3.5.3 3.5.1.2]
IRI77_32480  murI; glutamate racemase [KO:K01776] [EC:5.1.1.3]
IRI77_17265  murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [KO:K01925] [EC:6.3.2.9]
IRI77_12070  dipeptide epimerase [KO:K19802] [EC:5.1.1.20 5.1.1.25]
IRI77_30880  dapF; diaminopimelate epimerase [KO:K01778] [EC:5.1.1.7]
IRI77_18585  lysA; diaminopimelate decarboxylase [KO:K01586] [EC:4.1.1.20]
IRI77_07280  4-hydroxyproline epimerase [KO:K12658] [EC:5.1.1.8]
IRI77_07265  NAD(P)/FAD-dependent oxidoreductase [KO:K22549] [EC:1.5.99.-]
IRI77_07275  FAD-binding oxidoreductase [KO:K21061] [EC:1.5.99.-]
IRI77_07270  (2Fe-2S)-binding protein [KO:K22550]
IRI77_07260  dihydrodipicolinate synthase family protein [KO:K21062] [EC:3.5.4.22]
Compound
C00022  Pyruvate
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00077  L-Ornithine
C00079  L-Phenylalanine
C00084  Acetaldehyde
C00097  L-Cysteine
C00133  D-Alanine
C00134  Putrescine
C00135  L-Histidine
C00148  L-Proline
C00166  Phenylpyruvate
C00188  L-Threonine
C00217  D-Glutamate
C00402  D-Aspartate
C00431  5-Aminopentanoate
C00433  2,5-Dioxopentanoate
C00515  D-Ornithine
C00624  N-Acetyl-L-glutamate
C00666  LL-2,6-Diaminoheptanedioate
C00680  meso-2,6-Diaminoheptanedioate
C00692  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739  D-Lysine
C00740  D-Serine
C00763  D-Proline
C00792  D-Arginine
C00793  D-Cysteine
C00819  D-Glutamine
C00820  D-Threonine
C00855  D-Methionine
C00993  D-Alanyl-D-alanine
C01110  5-Amino-2-oxopentanoic acid
C01157  Hydroxyproline
C01180  4-Methylthio-2-oxobutanoic acid
C01667  Bacitracin
C01672  Cadaverine
C01726  D-Lombricine
C02237  5-Oxo-D-proline
C02265  D-Phenylalanine
C02855  N-Phospho-D-lombricine
C03239  6-Amino-2-oxohexanoate
C03341  2-Amino-4-oxopentanoic acid
C03440  cis-4-Hydroxy-D-proline
C03564  1-Pyrroline-2-carboxylate
C03771  5-Guanidino-2-oxopentanoate
C03933  5-D-Glutamyl-D-glutamyl-peptide
C03943  (2R,4S)-2,4-Diaminopentanoate
C04260  O-D-Alanyl-poly(ribitol phosphate)
C04282  1-Pyrroline-4-hydroxy-2-carboxylate
C04457  D-Alanyl-alanyl-poly(glycerolphosphate)
C05161  (2R,5S)-2,5-Diaminohexanoate
C05620  N-Acetyl-D-phenylalanine
C05825  2-Amino-5-oxohexanoate
C05939  Linatine
C05941  2-Oxo-4-hydroxy-5-aminovalerate
C05942  Pyrrole-2-carboxylate
C06419  D-Histidine
C22024  Staphylopine
C22025  (2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611  N-Acetyl-D-glutamate
Reference
PMID:33788945
  Authors
Miyamoto T, Homma H
  Title
D-Amino acid metabolism in bacteria.
  Journal
J Biochem 170:5-13 (2021)
DOI:10.1093/jb/mvab043
Reference
PMID:27230378
  Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
  Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
  Journal
Science 352:1105-9 (2016)
DOI:10.1126/science.aaf1018
Related
pathway
pfer00010  Glycolysis / Gluconeogenesis
pfer00020  Citrate cycle (TCA cycle)
pfer00250  Alanine, aspartate and glutamate metabolism
pfer00260  Glycine, serine and threonine metabolism
pfer00270  Cysteine and methionine metabolism
pfer00300  Lysine biosynthesis
pfer00310  Lysine degradation
pfer00330  Arginine and proline metabolism
pfer00340  Histidine metabolism
pfer00360  Phenylalanine metabolism
pfer00550  Peptidoglycan biosynthesis
pfer00620  Pyruvate metabolism
KO pathway
ko00470   
LinkDB

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