KEGG   PATHWAY: pfla00020
Entry
pfla00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Phytohabitans flavus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfla00020  Citrate cycle (TCA cycle)
pfla00020

Module
pfla_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pfla00020]
pfla_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfla00020]
pfla_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfla00020]
pfla_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfla00020]
pfla_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfla00020]
Other DBs
GO: 0006099
Organism
Phytohabitans flavus [GN:pfla]
Gene
Pflav_036850  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
Pflav_075560  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
Pflav_049320  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Pflav_079150  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Pflav_081390  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Pflav_053760  pdhD_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pflav_036690  pdhD_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pflav_065320  oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Pflav_065330  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Pflav_032310  sucD_1; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Pflav_079040  sucD_2; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Pflav_079030  sucC1; succinate--CoA ligase [ADP-forming] subunit beta 1 [KO:K01903] [EC:6.2.1.5]
Pflav_062990  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Pflav_018400  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Pflav_063000  hypothetical protein [KO:K00240] [EC:1.3.5.1]
Pflav_018390  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
Pflav_018410  sdhC; succinate dehydrogenase [KO:K00241]
Pflav_066980  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
Pflav_066970  hypothetical protein [KO:K01678] [EC:4.2.1.2]
Pflav_066940  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Pflav_079130  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Pflav_063430  pckA; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
Pflav_054470  hypothetical protein [KO:K00163] [EC:1.2.4.1]
Pflav_053780  sucB; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfla00010  Glycolysis / Gluconeogenesis
pfla00053  Ascorbate and aldarate metabolism
pfla00061  Fatty acid biosynthesis
pfla00071  Fatty acid degradation
pfla00190  Oxidative phosphorylation
pfla00220  Arginine biosynthesis
pfla00250  Alanine, aspartate and glutamate metabolism
pfla00280  Valine, leucine and isoleucine degradation
pfla00350  Tyrosine metabolism
pfla00470  D-Amino acid metabolism
pfla00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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