KEGG   PATHWAY: pfx00020
Entry
pfx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas lurida
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfx00020  Citrate cycle (TCA cycle)
pfx00020

Module
pfx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pfx00020]
pfx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfx00020]
pfx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfx00020]
pfx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfx00020]
pfx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfx00020]
Other DBs
GO: 0006099
Organism
Pseudomonas lurida [GN:pfx]
Gene
A7318_08050  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A7318_06870  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
A7318_14205  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
A7318_11975  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A7318_15520  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
A7318_15525  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A7318_08075  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A7318_08080  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A7318_08085  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A7318_16955  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A7318_08095  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A7318_08090  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A7318_27930  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
A7318_08065  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A7318_08070  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A7318_08055  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A7318_08060  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
A7318_22505  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A7318_18340  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
A7318_03745  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
A7318_10455  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A7318_07095  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A7318_03895  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A7318_27040  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
A7318_27035  oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
A7318_00610  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A7318_01235  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A7318_10620  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A7318_16655  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A7318_01240  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfx00010  Glycolysis / Gluconeogenesis
pfx00053  Ascorbate and aldarate metabolism
pfx00061  Fatty acid biosynthesis
pfx00071  Fatty acid degradation
pfx00190  Oxidative phosphorylation
pfx00220  Arginine biosynthesis
pfx00250  Alanine, aspartate and glutamate metabolism
pfx00280  Valine, leucine and isoleucine degradation
pfx00350  Tyrosine metabolism
pfx00470  D-Amino acid metabolism
pfx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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