KEGG   PATHWAY: phi00515
Entry
phi00515                    Pathway                                
Name
Mannose type O-glycan biosynthesis - Pseudopodoces humilis (Tibetan ground-tit)
Description
Biosynthesis of mammalian O-mannosyl glycans is initiated by the transfer of mannose from mannose-P-Dol to serine or threonine residue, followed by extensions with N-acetylglucosamine (GlcNAc) and galactose (Gal) to generate core M1, M2 and M3 glycans. Core M1 and M2 glycans can then be further attached by fucose residues, sialic acid terminals and sulfatded glucuroinc acid terminals. Core M3 glycan is involved in the synthesis of alpha-dystroglycan, a heavily glycosylated protein found in muscle and brain tissues. Core M3 glycan contains a tandem repeat of ribitol 5-phosphate (Rbo5P) and -alpha3-GlcA-beta3-Xyl- repeating structures. Defects of genes encoding core glycans and modified core M3 glycans are associated with various congenital diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
phi00515  Mannose type O-glycan biosynthesis
phi00515

Other DBs
GO: 0035269
Organism
Pseudopodoces humilis (Tibetan ground-tit) [GN:phi]
Gene
102099802  POMT2; protein O-mannosyl-transferase 2 [KO:K00728] [EC:2.4.1.109]
102100984  LARGE; glycosyltransferase-like protein LARGE1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
102101108  POMT1; protein O-mannosyl-transferase 1 [KO:K00728] [EC:2.4.1.109]
102101397  GYLTL1B; glycosyltransferase-like protein LARGE2 isoform X1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
102104075  CHST10; carbohydrate sulfotransferase 10 [KO:K09674] [EC:2.8.2.-]
102104267  ST3GAL3; CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X2 [KO:K00781] [EC:2.4.3.6]
102104368  FKTN; fukutin isoform X1 [KO:K19872] [EC:2.7.8.-]
102104795  B4GALT3; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
102106294  B4GALT2; beta-1,4-galactosyltransferase 2 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
102106665  ISPD; isoprenoid synthase domain-containing protein [KO:K21031] [EC:2.7.7.40]
102107435  B3GAT1; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 [KO:K00735] [EC:2.4.1.135]
102108064  FUT4; alpha-(1,3)-fucosyltransferase 4 [KO:K07632] [EC:2.4.1.-]
102108313  FUT9; alpha-(1,3)-fucosyltransferase 9 [KO:K03663] [EC:2.4.1.152]
102108330  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
102108514  [KO:K00735] [EC:2.4.1.135]
102109000  MGAT5B; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B isoform X1 [KO:K09661] [EC:2.4.1.-]
102109081  B4GALT1; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
102109761  B3GAT2; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 [KO:K10157] [EC:2.4.1.135]
102110954  TMEM5; transmembrane protein 5 isoform X1 [KO:K21052] [EC:2.4.2.61]
102111308  B4GAT1; beta-1,4-glucuronyltransferase 1 [KO:K21032] [EC:2.4.1.-]
102112214  FKRP; fukutin-related protein [KO:K19873] [EC:2.7.8.-]
102112849  POMK; protein O-mannose kinase [KO:K17547] [EC:2.7.1.183]
102112863  POMGNT1; protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 [KO:K09666] [EC:2.4.1.-]
102113102  B3GALNT2; UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2 [KO:K09654] [EC:2.4.1.313]
102114408  POMGNT2; protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 [KO:K18207] [EC:2.4.1.312]
Compound
C00063  CTP
C00789  CDP-ribitol
C01068  D-Ribitol 5-phosphate
C02189  [Protein]-L-serine
G10617  Dolichyl phosphate D-mannose
G13026  
G13027  
G13028  
G13082  
G13083  
G13084  O-Mannose core M1
G13085  
G13086  O-Mannose core M2
G13087  
G13088  
G13089  
G13090  
G13091  O-mannose core M3
G13092  Phospho-core M3
G13093  
G13094  
G13095  
G13096  
G13097  
G13098  
G13099  
G13100  
Reference
  Authors
Praissman JL, Wells L
  Title
Mammalian O-mannosylation pathway: glycan structures, enzymes, and protein substrates.
  Journal
Biochemistry 53:3066-78 (2014)
DOI:10.1021/bi500153y
Reference
  Authors
Stalnaker SH, Stuart R, Wells L
  Title
Mammalian O-mannosylation: unsolved questions of structure/function.
  Journal
Curr Opin Struct Biol 21:603-9 (2011)
DOI:10.1016/j.sbi.2011.09.001
Reference
  Authors
Kanagawa M, Kobayashi K, Tajiri M, Manya H, Kuga A, Yamaguchi Y, Akasaka-Manya K, Furukawa J, Mizuno M, Kawakami H, Shinohara Y, Wada Y, Endo T, Toda T
  Title
Identification of a Post-translational Modification with Ribitol-Phosphate and Its Defect in Muscular Dystrophy.
  Journal
Cell Rep 14:2209-23 (2016)
DOI:10.1016/j.celrep.2016.02.017
Reference
  Authors
Manya H, Yamaguchi Y, Kanagawa M, Kobayashi K, Tajiri M, Akasaka-Manya K, Kawakami H, Mizuno M, Wada Y, Toda T, Endo T
  Title
The Muscular Dystrophy Gene TMEM5 Encodes a Ribitol beta1,4-Xylosyltransferase Required for the Functional Glycosylation of Dystroglycan.
  Journal
J Biol Chem 291:24618-24627 (2016)
DOI:10.1074/jbc.M116.751917
Related
pathway
phi00510  N-Glycan biosynthesis
KO pathway
ko00515   

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