KEGG   PATHWAY: pib00030
Entry
pib00030                    Pathway                                
Name
Pentose phosphate pathway - Paenibacillus ihbetae
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pib00030  Pentose phosphate pathway
pib00030

Module
pib_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pib00030]
pib_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pib00030]
pib_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:pib00030]
pib_M00580  Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:pib00030]
pib_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:pib00030]
Other DBs
GO: 0006098
Organism
Paenibacillus ihbetae [GN:pib]
Gene
BBD41_19860  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
BBD41_01810  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
BBD41_18630  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BBD41_25405  3-carboxymuconate cyclase [KO:K07404] [EC:3.1.1.31]
BBD41_11555  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
BBD41_05405  phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BBD41_14265  6-phosphogluconate dehydrogenase (decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BBD41_05150  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
BBD41_01070  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
BBD41_19845  transketolase [KO:K00615] [EC:2.2.1.1]
BBD41_24175  ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
BBD41_16335  ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
BBD41_28040  3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
BBD41_28045  6-phospho 3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
BBD41_17875  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
BBD41_05045  ribokinase [KO:K00852] [EC:2.7.1.15]
BBD41_23950  ribokinase [KO:K00852] [EC:2.7.1.15]
BBD41_01065  ribokinase [KO:K00852] [EC:2.7.1.15]
BBD41_28385  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
BBD41_17885  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
BBD41_16465  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
BBD41_00460  phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
BBD41_14055  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
BBD41_13380  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
BBD41_18200  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BBD41_20645  bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BBD41_21830  sugar dehydrogenase [KO:K00034] [EC:1.1.1.47]
BBD41_00875  gluconolactonase [KO:K01053] [EC:3.1.1.17]
BBD41_01910  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
BBD41_01915  dehydrogenase [KO:K06152] [EC:1.1.99.3]
BBD41_14250  gluconokinase [KO:K25031] [EC:2.7.1.12]
BBD41_20650  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
BBD41_17175  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
BBD41_13585  fructose-1,6-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
BBD41_20595  fructose-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
BBD41_22365  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pib00010  Glycolysis / Gluconeogenesis
pib00040  Pentose and glucuronate interconversions
pib00052  Galactose metabolism
pib00230  Purine metabolism
pib00240  Pyrimidine metabolism
pib00340  Histidine metabolism
pib00630  Glyoxylate and dicarboxylate metabolism
pib00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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