KEGG   PATHWAY: pku00020
Entry
pku00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Planococcus kocurii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pku00020  Citrate cycle (TCA cycle)
pku00020

Module
pku_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pku00020]
pku_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pku00020]
pku_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pku00020]
pku_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pku00020]
pku_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pku00020]
Other DBs
GO: 0006099
Organism
Planococcus kocurii [GN:pku]
Gene
AUO94_16180  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
AUO94_10520  citrate synthase [KO:K01647] [EC:2.3.3.1]
AUO94_09095  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AUO94_10515  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AUO94_07895  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AUO94_07900  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AUO94_05575  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AUO94_09260  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AUO94_06185  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AUO94_06180  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AUO94_02000  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AUO94_02010  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AUO94_10270  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AUO94_10265  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AUO94_07465  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AUO94_10275  succinate dehydrogenase [KO:K00241]
AUO94_14935  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AUO94_10510  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AUO94_00700  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AUO94_05655  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AUO94_11045  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AUO94_05560  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AUO94_05565  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AUO94_05570  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pku00010  Glycolysis / Gluconeogenesis
pku00053  Ascorbate and aldarate metabolism
pku00061  Fatty acid biosynthesis
pku00071  Fatty acid degradation
pku00190  Oxidative phosphorylation
pku00220  Arginine biosynthesis
pku00250  Alanine, aspartate and glutamate metabolism
pku00280  Valine, leucine and isoleucine degradation
pku00350  Tyrosine metabolism
pku00470  D-Amino acid metabolism
pku00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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