KEGG   PATHWAY: pln00020
Entry
pln00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Planococcus sp. PAMC 21323
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pln00020  Citrate cycle (TCA cycle)
pln00020

Module
pln_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pln00020]
pln_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pln00020]
pln_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pln00020]
pln_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pln00020]
pln_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pln00020]
Other DBs
GO: 0006099
Organism
Planococcus sp. PAMC 21323 [GN:pln]
Gene
Plano_0085  citrate synthase [KO:K01647] [EC:2.3.3.1]
Plano_1108  citrate synthase [KO:K01647] [EC:2.3.3.1]
Plano_1403  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Plano_1109  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Plano_1613  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Plano_1612  dihydrolipoyllysine-residue succinyltransferase component [KO:K00658] [EC:2.3.1.61]
Plano_1366  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Plano_2022  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Plano_1905  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
Plano_1906  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
Plano_2749  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
Plano_2752  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
Plano_1160  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Plano_1161  succinate dehydrogenase, iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Plano_1159  succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
Plano_0331  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Plano_1110  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Plano_2960  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Plano_2007  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Plano_1001  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Plano_2025  pyruvate dehydrogenase E1 subunit alpha [KO:K00161] [EC:1.2.4.1]
Plano_2024  pyruvate dehydrogenase E1 subunit beta [KO:K00162] [EC:1.2.4.1]
Plano_2023  branched-chain alpha-keto acid dehydrogenase subunit [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pln00010  Glycolysis / Gluconeogenesis
pln00053  Ascorbate and aldarate metabolism
pln00061  Fatty acid biosynthesis
pln00071  Fatty acid degradation
pln00190  Oxidative phosphorylation
pln00220  Arginine biosynthesis
pln00250  Alanine, aspartate and glutamate metabolism
pln00280  Valine, leucine and isoleucine degradation
pln00350  Tyrosine metabolism
pln00470  D-Amino acid metabolism
pln00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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