KEGG   PATHWAY: pmam00020
Entry
pmam00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas maumuensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmam00020  Citrate cycle (TCA cycle)
pmam00020

Module
pmam_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pmam00020]
pmam_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pmam00020]
pmam_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmam00020]
pmam_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pmam00020]
pmam_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmam00020]
Other DBs
GO: 0006099
Organism
Pseudomonas maumuensis [GN:pmam]
Gene
KSS90_08755  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KSS90_17795  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KSS90_09405  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KSS90_10225  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KSS90_10230  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KSS90_08780  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KSS90_08785  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KSS90_07890  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KSS90_08790  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KSS90_25300  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KSS90_08800  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KSS90_08795  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KSS90_24770  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
KSS90_08770  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KSS90_08775  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KSS90_08760  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KSS90_08765  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KSS90_20840  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KSS90_05250  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KSS90_19230  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KSS90_17760  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KSS90_04505  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KSS90_06610  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KSS90_11160  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KSS90_25195  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
KSS90_25190  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
KSS90_24345  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KSS90_01850  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KSS90_21285  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
KSS90_01845  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmam00010  Glycolysis / Gluconeogenesis
pmam00053  Ascorbate and aldarate metabolism
pmam00061  Fatty acid biosynthesis
pmam00071  Fatty acid degradation
pmam00190  Oxidative phosphorylation
pmam00220  Arginine biosynthesis
pmam00250  Alanine, aspartate and glutamate metabolism
pmam00280  Valine, leucine and isoleucine degradation
pmam00350  Tyrosine metabolism
pmam00470  D-Amino acid metabolism
pmam00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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