KEGG   PATHWAY: pmei03430
Entry
pmei03430                   Pathway                                
Name
Mismatch repair - Poecilia mexicana (shortfin molly)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
pmei03430  Mismatch repair
pmei03430

Other DBs
GO: 0006298
Organism
Poecilia mexicana (shortfin molly) [GN:pmei]
Gene
106903231  pms2; mismatch repair endonuclease PMS2 isoform X1 [KO:K10858]
106904243  msh2; DNA mismatch repair protein Msh2 [KO:K08735]
106906255  [KO:K10739]
106906886  [KO:K07466]
106906932  pold3; DNA polymerase delta subunit 3 [KO:K03504]
106907356  rpa2; replication protein A 32 kDa subunit isoform X1 [KO:K10739]
106908704  [KO:K08736]
106911555  rfc4; replication factor C subunit 4 [KO:K10755]
106911961  [KO:K08736]
106914229  rfc1; replication factor C subunit 1 isoform X1 [KO:K10754]
106915420  [KO:K07466]
106919446  rfc5; replication factor C subunit 5 [KO:K10756]
106921161  rpa3; replication protein A 14 kDa subunit [KO:K10740]
106921262  mlh1; DNA mismatch repair protein Mlh1 isoform X1 [KO:K08734]
106921938  pcna; proliferating cell nuclear antigen [KO:K04802]
106922222  rfc3; replication factor C subunit 3 [KO:K10756]
106923534  mlh3; DNA mismatch repair protein Mlh3 isoform X1 [KO:K08739]
106926134  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
106927846  exo1; exonuclease 1 [KO:K10746] [EC:3.1.-.-]
106930723  lig1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
106931200  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
106931672  msh6; DNA mismatch repair protein Msh6 [KO:K08737]
106932679  pold4; DNA polymerase delta subunit 4 [KO:K03505]
106933819  pold2; DNA polymerase delta subunit 2 [KO:K02328]
106934256  rfc2; replication factor C subunit 2 [KO:K10755]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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