KEGG   PATHWAY: pms00630
Entry
pms00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paenibacillus mucilaginosus KNP414
Class
Metabolism; Carbohydrate metabolism
Pathway map
pms00630  Glyoxylate and dicarboxylate metabolism
pms00630

Module
pms_M00621  Glycine cleavage system [PATH:pms00630]
Other DBs
GO: 0046487 0043648
Organism
Paenibacillus mucilaginosus KNP414 [GN:pms]
Gene
KNP414_03909  acsA; AcsA [KO:K01895] [EC:6.2.1.1]
KNP414_01283  mdh; Mdh [KO:K00024] [EC:1.1.1.37]
KNP414_01280  citZ; CitZ [KO:K01647] [EC:2.3.3.1]
KNP414_05968  citA; CitA [KO:K01647] [EC:2.3.3.1]
KNP414_00546  acn; Acn [KO:K01681] [EC:4.2.1.3]
KNP414_02583  atoB; AtoB [KO:K00626] [EC:2.3.1.9]
KNP414_04533  glcD; GlcD [KO:K00104] [EC:1.1.99.14]
KNP414_04532  hypothetical protein [KO:K11473] [EC:1.1.99.14]
KNP414_07888  katX2; KatX2 [KO:K03781] [EC:1.11.1.6]
KNP414_07226  katA; KatA [KO:K03781] [EC:1.11.1.6]
KNP414_06513  katX; KatX [KO:K03781] [EC:1.11.1.6]
KNP414_03014  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
KNP414_00592  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00018] [EC:1.1.1.29]
KNP414_01817  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00018] [EC:1.1.1.29]
KNP414_00166  Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
KNP414_02654  Haloacid dehalogenase domain protein hydrolase [KO:K01091] [EC:3.1.3.18]
KNP414_07713  hydrolase, haloacid dehalogenase-like family [KO:K01091] [EC:3.1.3.18]
KNP414_01251  haloacid dehalogenase domain-containing protein hydrolase [KO:K01091] [EC:3.1.3.18]
KNP414_04466  MTA/SAH nucleosidase / phosphatase [KO:K01091] [EC:3.1.3.18]
KNP414_02913  glnA; GlnA [KO:K01915] [EC:6.3.1.2]
KNP414_06747  glnA2; GlnA2 [KO:K01915] [EC:6.3.1.2]
KNP414_00043  glyA; GlyA [KO:K00600] [EC:2.1.2.1]
KNP414_07402  gcvPA; GcvPA [KO:K00282] [EC:1.4.4.2]
KNP414_07403  gcvPB; GcvPB [KO:K00283] [EC:1.4.4.2]
KNP414_07401  gcvT; GcvT [KO:K00605] [EC:2.1.2.10]
KNP414_02693  bfmBC; BfmBC [KO:K00382] [EC:1.8.1.4]
KNP414_06346  pdhD; PdhD [KO:K00382] [EC:1.8.1.4]
KNP414_00753  gcvH; GcvH [KO:K02437]
KNP414_07400  gcvH2; GcvH2 [KO:K02437]
KNP414_02312  glyoxylate-induced protein [KO:K01816] [EC:5.3.1.22]
KNP414_06630  xylose isomerase domain-containing protein [KO:K01816] [EC:5.3.1.22]
KNP414_04895  garR; GarR [KO:K00042] [EC:1.1.1.60]
KNP414_01818  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
KNP414_04894  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
KNP414_00580  conserved hypothetical protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
KNP414_04771  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
KNP414_01528  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
KNP414_03552  cyclase family protein [KO:K07130] [EC:3.5.1.9]
KNP414_00659  purU; PurU [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pms00010  Glycolysis / Gluconeogenesis
pms00020  Citrate cycle (TCA cycle)
pms00030  Pentose phosphate pathway
pms00053  Ascorbate and aldarate metabolism
pms00071  Fatty acid degradation
pms00230  Purine metabolism
pms00250  Alanine, aspartate and glutamate metabolism
pms00260  Glycine, serine and threonine metabolism
pms00620  Pyruvate metabolism
pms00710  Carbon fixation by Calvin cycle
pms00750  Vitamin B6 metabolism
pms00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

DBGET integrated database retrieval system