KEGG   PATHWAY: pms00260
Entry
pms00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Paenibacillus mucilaginosus KNP414
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
pms00260  Glycine, serine and threonine metabolism
pms00260

Module
pms_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:pms00260]
pms_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:pms00260]
pms_M00621  Glycine cleavage system [PATH:pms00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Paenibacillus mucilaginosus KNP414 [GN:pms]
Gene
KNP414_02658  lysC; LysC [KO:K00928] [EC:2.7.2.4]
KNP414_05757  dapG; DapG [KO:K00928] [EC:2.7.2.4]
KNP414_06141  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
KNP414_05758  asd; Asd [KO:K00133] [EC:1.2.1.11]
KNP414_06428  hom; Hom [KO:K00003] [EC:1.1.1.3]
KNP414_06427  homoserine kinase [KO:K00872] [EC:2.7.1.39]
KNP414_03972  aminoglycoside phosphotransferase [KO:K02204] [EC:2.7.1.39]
KNP414_02856  threonine synthase [KO:K01733] [EC:4.2.3.1]
KNP414_03493  Pyridoxal-5'-phosphate-dependent protein beta subunit [KO:K01733] [EC:4.2.3.1]
KNP414_06872  L-threonine synthase [KO:K01733] [EC:4.2.3.1]
KNP414_00043  glyA; GlyA [KO:K00600] [EC:2.1.2.1]
KNP414_00592  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00018] [EC:1.1.1.29]
KNP414_01817  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [KO:K00018] [EC:1.1.1.29]
KNP414_03014  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
KNP414_01818  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
KNP414_04894  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
KNP414_03168  Phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
KNP414_00353  Phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
KNP414_02803  Phosphoglycerate mutase [KO:K15634] [EC:5.4.2.11]
KNP414_06143  phosphoglycerate mutase [KO:K15634] [EC:5.4.2.11]
KNP414_00220  gpmI; GpmI [KO:K15633] [EC:5.4.2.12]
KNP414_02744  phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
KNP414_06705  serC; SerC [KO:K00831] [EC:2.6.1.52]
KNP414_02919  ysaA; YsaA [KO:K25528] [EC:3.1.3.3]
KNP414_07402  gcvPA; GcvPA [KO:K00282] [EC:1.4.4.2]
KNP414_07403  gcvPB; GcvPB [KO:K00283] [EC:1.4.4.2]
KNP414_07401  gcvT; GcvT [KO:K00605] [EC:2.1.2.10]
KNP414_02693  bfmBC; BfmBC [KO:K00382] [EC:1.8.1.4]
KNP414_06346  pdhD; PdhD [KO:K00382] [EC:1.8.1.4]
KNP414_00753  gcvH; GcvH [KO:K02437]
KNP414_07400  gcvH2; GcvH2 [KO:K02437]
KNP414_07550  CDP-diacylglycerol/serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
KNP414_07441  Aldehyde dehydrogenase [KO:K00130] [EC:1.2.1.8]
KNP414_04974  monomeric sarcosine oxidase [KO:K00301] [EC:1.5.3.1]
KNP414_05049  L-serine dehydratase, iron-sulfur-dependent, alpha subunit [KO:K01752] [EC:4.3.1.17]
KNP414_05050  L-serine dehydratase, iron-sulfur-dependent, beta subunit [KO:K01752] [EC:4.3.1.17]
KNP414_06600  ilvA; IlvA [KO:K01754] [EC:4.3.1.19]
KNP414_02511  ygeA; YgeA [KO:K25316] [EC:5.1.1.10]
KNP414_02797  tryptophan synthase, alpha subunit [KO:K01695] [EC:4.2.1.20]
KNP414_02796  trpB; TrpB [KO:K01696] [EC:4.2.1.20]
KNP414_07060  rhbA; RhbA [KO:K00836] [EC:2.6.1.76]
KNP414_05130  diaminobutyrate/2-oxoglutarate aminotransferase [KO:K00836] [EC:2.6.1.76]
KNP414_07059  L-2,4-diaminobutyrate decarboxylase [KO:K13745] [EC:4.1.1.86]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
pms00010  Glycolysis / Gluconeogenesis
pms00020  Citrate cycle (TCA cycle)
pms00230  Purine metabolism
pms00250  Alanine, aspartate and glutamate metabolism
pms00270  Cysteine and methionine metabolism
pms00290  Valine, leucine and isoleucine biosynthesis
pms00300  Lysine biosynthesis
pms00330  Arginine and proline metabolism
pms00460  Cyanoamino acid metabolism
pms00470  D-Amino acid metabolism
pms00564  Glycerophospholipid metabolism
pms00600  Sphingolipid metabolism
pms00620  Pyruvate metabolism
pms00630  Glyoxylate and dicarboxylate metabolism
pms00640  Propanoate metabolism
pms00680  Methane metabolism
pms00860  Porphyrin metabolism
pms00920  Sulfur metabolism
KO pathway
ko00260   
LinkDB

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