KEGG   PATHWAY: pom00020
Entry
pom00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Polaribacter sp. MED152
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pom00020  Citrate cycle (TCA cycle)
pom00020

Module
pom_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pom00020]
pom_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pom00020]
pom_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pom00020]
pom_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pom00020]
pom_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pom00020]
Other DBs
GO: 0006099
Organism
Polaribacter sp. MED152 [GN:pom]
Gene
MED152_01645  acn; aconitate hydratase [KO:K27802]
MED152_02240  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
MED152_02725  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MED152_03340  pdhA; pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
MED152_03345  [KO:K00627] [EC:2.3.1.12]
MED152_03460  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
MED152_03895  [KO:K00382] [EC:1.8.1.4]
MED152_04060  [KO:K01958] [EC:6.4.1.1]
MED152_04175  [KO:K00658] [EC:2.3.1.61]
MED152_04335  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
MED152_07935  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
MED152_07940  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
MED152_08105  sdhC; succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
MED152_08110  sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MED152_08115  sdhB; succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
MED152_09985  [KO:K00382] [EC:1.8.1.4]
MED152_11854  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MED152_11934  pdhB; pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
MED152_12129  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MED152_12629  [KO:K01647] [EC:2.3.3.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pom00010  Glycolysis / Gluconeogenesis
pom00061  Fatty acid biosynthesis
pom00071  Fatty acid degradation
pom00190  Oxidative phosphorylation
pom00220  Arginine biosynthesis
pom00250  Alanine, aspartate and glutamate metabolism
pom00280  Valine, leucine and isoleucine degradation
pom00350  Tyrosine metabolism
pom00470  D-Amino acid metabolism
pom00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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