KEGG   PATHWAY: ppaa00020
Entry
ppaa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas paraeruginosa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppaa00020  Citrate cycle (TCA cycle)
ppaa00020

Module
ppaa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppaa00020]
ppaa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppaa00020]
ppaa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppaa00020]
ppaa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppaa00020]
ppaa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppaa00020]
Other DBs
GO: 0006099
Organism
Pseudomonas paraeruginosa [GN:ppaa]
Gene
B7D75_16980  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
B7D75_17080  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
B7D75_16110  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
B7D75_11890  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B7D75_11895  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
B7D75_16955  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
B7D75_16950  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
B7D75_13715  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B7D75_16945  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B7D75_16935  succinyl-CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
B7D75_28260  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
B7D75_16965  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B7D75_16960  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
B7D75_16975  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
B7D75_16970  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
B7D75_22255  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
B7D75_21025  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
B7D75_23010  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
B7D75_07775  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
B7D75_23930  malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
B7D75_28205  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
B7D75_28200  oadA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
B7D75_26920  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
B7D75_26035  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
B7D75_03935  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
B7D75_26045  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppaa00010  Glycolysis / Gluconeogenesis
ppaa00053  Ascorbate and aldarate metabolism
ppaa00061  Fatty acid biosynthesis
ppaa00071  Fatty acid degradation
ppaa00190  Oxidative phosphorylation
ppaa00220  Arginine biosynthesis
ppaa00250  Alanine, aspartate and glutamate metabolism
ppaa00280  Valine, leucine and isoleucine degradation
ppaa00350  Tyrosine metabolism
ppaa00470  D-Amino acid metabolism
ppaa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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