KEGG   PATHWAY: ppam00020
Entry
ppam00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pteronotus mesoamericanus (Parnell's mustached bat)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppam00020  Citrate cycle (TCA cycle)
ppam00020

Module
ppam_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ppam00020]
ppam_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ppam00020]
ppam_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ppam00020]
ppam_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ppam00020]
ppam_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ppam00020]
Other DBs
GO: 0006099
Organism
Pteronotus mesoamericanus (Parnell's mustached bat) [GN:ppam]
Gene
129063351  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
129065890  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
129068541  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
129068931  OGDH; 2-oxoglutarate dehydrogenase complex component E1 [KO:K00164] [EC:1.2.4.2]
129069678  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
129070603  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
129070808  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
129073038  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
129073200  [KO:K00031] [EC:1.1.1.42]
129073315  [KO:K00031] [EC:1.1.1.42]
129073908  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
129073943  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
129074148  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
129074359  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
129074559  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
129075622  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
129075776  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
129076931  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
129077860  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
129080386  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
129080508  [KO:K00030] [EC:1.1.1.41]
129080959  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
129081350  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
129082086  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
129082382  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
129083042  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
129083792  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
129085187  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
129085956  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
129085977  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
129087064  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
129087854  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
129087923  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ppam00010  Glycolysis / Gluconeogenesis
ppam00053  Ascorbate and aldarate metabolism
ppam00061  Fatty acid biosynthesis
ppam00062  Fatty acid elongation
ppam00071  Fatty acid degradation
ppam00190  Oxidative phosphorylation
ppam00220  Arginine biosynthesis
ppam00250  Alanine, aspartate and glutamate metabolism
ppam00280  Valine, leucine and isoleucine degradation
ppam00350  Tyrosine metabolism
ppam00470  D-Amino acid metabolism
ppam00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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