KEGG   PATHWAY: ppp00630
Entry
ppp00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Physcomitrium patens (spreading earthmoss)
Class
Metabolism; Carbohydrate metabolism
Pathway map
ppp00630  Glyoxylate and dicarboxylate metabolism
ppp00630

Module
ppp_M00012  Glyoxylate cycle [PATH:ppp00630]
ppp_M00532  Photorespiration [PATH:ppp00630]
ppp_M00621  Glycine cleavage system [PATH:ppp00630]
Other DBs
GO: 0046487 0043648
Organism
Physcomitrium patens (spreading earthmoss) [GN:ppp]
Gene
112284299  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1]
112284910  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1]
112273450  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
112286963  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
112288755  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
112286775  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
112273017  malate synthase, glyoxysomal-like [KO:K01638] [EC:2.3.3.9]
112273839  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
112280991  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
112283037  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
112285379  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
112288564  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
112290003  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
112294408  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
112275853  citrate synthase 3, peroxisomal-like isoform X1 [KO:K01647] [EC:2.3.3.1]
112280492  citrate synthase 4, mitochondrial-like isoform X1 [KO:K01647] [EC:2.3.3.1]
112289638  citrate synthase 3, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
112290662  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
112279919  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
112286643  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
112292378  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
112292402  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
112281670  acetyl-CoA acetyltransferase, cytosolic 1-like isoform X1 [KO:K00626] [EC:2.3.1.9]
112284731  acetyl-CoA acetyltransferase, cytosolic 1-like isoform X1 [KO:K00626] [EC:2.3.1.9]
112275493  methylmalonyl-CoA epimerase, mitochondrial-like [KO:K05606] [EC:5.1.99.1]
112275230  (S)-2-hydroxy-acid oxidase GLO1-like [KO:K11517] [EC:1.1.3.15]
112281252  (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
112287317  peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
112296042  peroxisomal (S)-2-hydroxy-acid oxidase GLO5-like [KO:K11517] [EC:1.1.3.15]
112295015  peroxisomal (S)-2-hydroxy-acid oxidase GLO5-like [KO:K11517] [EC:1.1.3.15]
112275088  catalase isozyme 2-like [KO:K03781] [EC:1.11.1.6]
112282106  catalase isozyme 1-like [KO:K03781] [EC:1.11.1.6]
112290297  uncharacterized protein LOC112290297 [KO:K03781] [EC:1.11.1.6]
112295083  uncharacterized protein LOC112295083 [KO:K03781] [EC:1.11.1.6]
112295791  uncharacterized protein LOC112295791 [KO:K03781] [EC:1.11.1.6]
112295181  catalase isozyme 2-like [KO:K03781] [EC:1.11.1.6]
112295828  uncharacterized protein LOC112295828 [KO:K03781] [EC:1.11.1.6]
112275582  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
112276142  glyoxylate/succinic semialdehyde reductase 2, chloroplastic-like isoform X1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
112272755  glycerate dehydrogenase-like [KO:K15893] [EC:1.1.1.29]
112294925  glycerate dehydrogenase-like [KO:K15893] [EC:1.1.1.29]
112290966  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
112293845  phosphoglycolate phosphatase 1B, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
112295958  phosphoglycolate phosphatase 1B, chloroplastic-like isoform X1 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
2546763  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
112272763  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
112274645  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112275362  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112280678  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112280488  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112280489  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112280706  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
112280122  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
112281127  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
112281851  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
112289392  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112289395  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112289458  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
112289708  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112290347  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112290348  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112290387  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112289961  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112290462  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112290463  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112290816  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112292865  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112292867  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112296016  ribulose bisphosphate carboxylase small chain clone 512-like [KO:K01602] [EC:4.1.1.39]
112296165  ribulose bisphosphate carboxylase small chain, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
112274328  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
112290862  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
112295317  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
112277304  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
112282312  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
112293257  glutamate--glyoxylate aminotransferase 2-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
112284730  ferredoxin-dependent glutamate synthase, chloroplastic-like [KO:K00284] [EC:1.4.7.1]
112286024  ferredoxin-dependent glutamate synthase, chloroplastic-like [KO:K00284] [EC:1.4.7.1]
112272978  glutamine synthetase, chloroplastic-like [KO:K01915] [EC:6.3.1.2]
112273274  glutamine synthetase, chloroplastic-like [KO:K01915] [EC:6.3.1.2]
112274118  glutamine synthetase cytosolic isozyme 1-4-like [KO:K01915] [EC:6.3.1.2]
112274268  glutamine synthetase cytosolic isozyme-like [KO:K01915] [EC:6.3.1.2]
112295368  glutamine synthetase cytosolic isozyme-like [KO:K01915] [EC:6.3.1.2]
112295369  glutamine synthetase cytosolic isozyme [KO:K01915] [EC:6.3.1.2]
112281737  serine hydroxymethyltransferase 4-like isoform X1 [KO:K00600] [EC:2.1.2.1]
112281699  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
112289599  serine hydroxymethyltransferase 1, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
112290356  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
112290357  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
112290921  serine hydroxymethyltransferase 1, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
112292574  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
112278523  glycine dehydrogenase (decarboxylating) A, mitochondrial-like [KO:K00281] [EC:1.4.4.2]
112293875  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
112293888  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
112281392  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
112289169  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
112279495  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
112285656  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
112290022  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
112294508  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
112272785  uncharacterized protein LOC112272785 [KO:K02437]
112285444  uncharacterized protein LOC112285444 [KO:K02437]
112295507  D-glycerate 3-kinase, chloroplastic-like [KO:K15918] [EC:2.7.1.31]
112293912  formate dehydrogenase 1, mitochondrial-like [KO:K00122] [EC:1.17.1.9]
112291386  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
112291285  formyltetrahydrofolate deformylase 1, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
112293154  formyltetrahydrofolate deformylase 1, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
112279244  uncharacterized protein LOC112279244 [KO:K01455] [EC:3.5.1.49]
112277050  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ppp00010  Glycolysis / Gluconeogenesis
ppp00020  Citrate cycle (TCA cycle)
ppp00030  Pentose phosphate pathway
ppp00053  Ascorbate and aldarate metabolism
ppp00071  Fatty acid degradation
ppp00230  Purine metabolism
ppp00250  Alanine, aspartate and glutamate metabolism
ppp00260  Glycine, serine and threonine metabolism
ppp00620  Pyruvate metabolism
ppp00710  Carbon fixation in photosynthetic organisms
ppp00750  Vitamin B6 metabolism
ppp00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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