KEGG   PATHWAY: pps00020
Entry
pps00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pan paniscus (bonobo)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pps00020  Citrate cycle (TCA cycle)
pps00020

Module
pps_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pps00020]
pps_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pps00020]
pps_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pps00020]
pps_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pps00020]
pps_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pps00020]
Other DBs
GO: 0006099
Organism
Pan paniscus (bonobo) [GN:pps]
Gene
100967413  ACO1; cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
100968153  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
100968720  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
100971297  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100972419  CS; citrate synthase, mitochondrial isoform X2 [KO:K01647] [EC:2.3.3.1]
100972968  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
100973241  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
100973485  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100974183  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
100975720  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X2 [KO:K00164] [EC:1.2.4.2]
100976371  OGDH; 2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
100977785  MDH1; malate dehydrogenase, cytoplasmic isoform X2 [KO:K00025] [EC:1.1.1.37]
100979264  IDH2; isocitrate dehydrogenase [NADP], mitochondrial isoform X1 [KO:K00031] [EC:1.1.1.42]
100979967  [KO:K00234] [EC:1.3.5.1]
100980059  [KO:K01647] [EC:2.3.3.1]
100980137  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
100980780  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
100981849  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
100982462  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
100983465  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
100984797  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
100985425  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X2 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
100986652  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
100987648  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
100989574  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X2 [KO:K00235] [EC:1.3.5.1]
100990112  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
100991112  MDH2; malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
100992582  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
100992849  [KO:K00237]
100993455  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
100994905  DLD; dihydrolipoyl dehydrogenase, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
100995634  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
117979961  [KO:K00237]
134728361  [KO:K00237]
134730342  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pps00010  Glycolysis / Gluconeogenesis
pps00053  Ascorbate and aldarate metabolism
pps00061  Fatty acid biosynthesis
pps00062  Fatty acid elongation
pps00071  Fatty acid degradation
pps00190  Oxidative phosphorylation
pps00220  Arginine biosynthesis
pps00250  Alanine, aspartate and glutamate metabolism
pps00280  Valine, leucine and isoleucine degradation
pps00350  Tyrosine metabolism
pps00470  D-Amino acid metabolism
pps00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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