KEGG   PATHWAY: ppsd04144
Entry
ppsd04144                   Pathway                                
Name
Endocytosis - Podospora pseudocomata
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
ppsd04144  Endocytosis
ppsd04144

Other DBs
GO: 0006897
Organism
Podospora pseudocomata [GN:ppsd]
Gene
QC762_001300  APM4; clathrin associated protein complex medium subunit [KO:K11826]
QC762_001480  HSE1; ESCRT-0 subunit protein hse1 [KO:K04705]
QC762_0029070  SSB1; Heat shock protein ssb1 [KO:K03283]
QC762_0087250  VPS60; Vacuolar protein-sorting-associated protein 60 [KO:K12198]
QC762_101540  YPT52; GTP-binding protein of the rab/ypt [KO:K07888]
QC762_101920  SNX4; intercellular trafficking and secretion [KO:K17919]
QC762_103230  VPS28; Vacuolar protein-sorting-associated protein 28 [KO:K12184]
QC762_104530  ARF1; Arf GTPase arf1 [KO:K07937]
QC762_104930  ENT3; Epsin-3, clathrin recruitment and traffic between the Golgi and endosome [KO:K12471]
QC762_105300  [KO:K12199]
QC762_106870  CAP2; F-actin-capping protein subunit beta [KO:K10365]
QC762_107210  arc1; ARP2/3 actin-organizing complex subunit Sop2 [KO:K05757]
QC762_107850  AGE1; GTPase activating protein [KO:K12488]
QC762_108320  CHC1; Clathrin heavy chain [KO:K04646]
QC762_113550  vps26; Vacuolar protein sorting-associated protein 26 [KO:K18466]
QC762_117600  ARC35; Arp complex subunit [KO:K05758]
QC762_119360  [KO:K23612]
QC762_120940  ARC19; Arp complex subunit [KO:K05755]
QC762_120970  PRP21_1; SF3a splicing factor complex subunit [KO:K17918]
QC762_122000  DID2; Vacuolar-sorting protein SNF7 [KO:K12197]
QC762_122750  [KO:K01115] [EC:3.1.4.4]
QC762_122880  GLO3; ADP-ribosylation factor GTPase activating protein, ER-Golgi transport [KO:K12493]
QC762_123140  [KO:K19366]
QC762_124090  [KO:K15053]
QC762_124220  [KO:K11825]
QC762_200420  hob1; BAR adaptor protein Hob1 [KO:K12562]
QC762_202440  SNF7; ESCRT-III subunit protein snf7 [KO:K12194]
QC762_203480  GTP14; Ypt/Rab-type GTPase Rab7 [KO:K07897]
QC762_203800  vps5; Vacuolar protein sorting-associated protein vps5 [KO:K17917]
QC762_213930  ARP2_1; Actin-related protein 2 [KO:K17260]
QC762_213970  ARF51F; ADP-ribosylation factor 6 [KO:K07941]
QC762_300340  PEP7; carboxypeptidase Y-deficient [KO:K12481]
QC762_301360  [KO:K01115] [EC:3.1.4.4]
QC762_302320  SEC7; guanine nucleotide exchange protein for ADP-robosylation factor [KO:K18442]
QC762_305050  YPT31; Rab GTPase ypt31 [KO:K07904]
QC762_307060  RHO1; GTP-binding protein Rho1 [KO:K04513]
QC762_307470  ARP3; Actin-related protein 3 [KO:K18584]
QC762_308210  vps29; Vacuolar protein sorting-associated protein 29 [KO:K18467]
QC762_308700  VPS24; Vacuolar protein-sorting-associated protein 24 [KO:K12193]
QC762_308900  VPS20; Vacuolar protein sorting-associated protein 20 [KO:K12195]
QC762_310230  [KO:K12472]
QC762_401350  STP22; Suppressor protein stp22 of temperature-sensitive alpha-factor receptor and arginine permease [KO:K12183]
QC762_402590  RSP5; NEDD4 E3 ubiquitin-protein ligase [KO:K10591] [EC:2.3.2.26]
QC762_402860  SPO14; Phospholipase D1 [KO:K01115] [EC:3.1.4.4]
QC762_406550  DOA4; ubiquitin-specific protease doa4 [KO:K11839] [EC:3.4.19.12]
QC762_406560  VPS27; Vacuolar protein-sorting-associated protein 27 [KO:K12182]
QC762_407050  AGE2; ARF GAP with effector function(s) [KO:K12486]
QC762_408830  CAP1; F-actin-capping protein subunit alpha [KO:K10364]
QC762_408930  [KO:K12189]
QC762_409040  [KO:K12471]
QC762_500130  RIM20; pH-response regulator protein palA/rim20 [KO:K12200]
QC762_502810  ARC18; subunit of the Arp2/3 complex [KO:K05756]
QC762_509630  MSS4; Phosphatidylinositol-4-phosphate 5-kinase [KO:K00889] [EC:2.7.1.68]
QC762_512960  VPS4; Vacuolar protein sorting-associated protein 4 [KO:K12196]
QC762_512990  [KO:K11866] [EC:3.4.19.12]
QC762_600590  VPS36; Vacuolar protein-sorting-associated protein 36 [KO:K12190]
QC762_601470  IST1; Vacuolar protein sorting-associated protein ist1 [KO:K19476]
QC762_601490  BRO1_2; bck1-like resistance to osmotic shock [KO:K11827]
QC762_601570  [KO:K10396] [EC:5.6.1.3]
QC762_601660  GCS1; ADP-ribosylation factor GTPase-activating protein gcs1 [KO:K12492]
QC762_602070  GEA2; GDP/GTP exchange factor for ARF [KO:K18443]
QC762_603980  [KO:K11824]
QC762_604010  ARC15; arp2/3 complex subunit [KO:K05754]
QC762_604100  SSA2; Hsp70 chaperone [KO:K03283]
QC762_606040  SEC4; GTP-binding protein [KO:K07901]
QC762_607530  vps35; retromer complex subunit Vps35 [KO:K18468]
QC762_702360  VPS45; vacuolar protein sorting-associated protein 45 [KO:K12479]
QC762_706390  DID4; ESCRT-III subunit protein did4 [KO:K12191]
QC762_709860  cdc42; GTPase Cdc42 [KO:K04393]
QC762_711390  dot2; ESCRT II complex subunit Dot2 [KO:K12188]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
ppsd04070  Phosphatidylinositol signaling system
ppsd04130  SNARE interactions in vesicular transport
ppsd04142  Lysosome
KO pathway
ko04144   

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