KEGG   PATHWAY: ppyg03430
Entry
ppyg03430                   Pathway                                
Name
Mismatch repair - Pongo pygmaeus (Bornean orangutan)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ppyg03430  Mismatch repair
ppyg03430

Other DBs
GO: 0006298
Organism
Pongo pygmaeus (Bornean orangutan) [GN:ppyg]
Gene
129007098  POLD4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
129008564  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
129009454  RFC5; replication factor C subunit 5 isoform X1 [KO:K10756]
129011241  RFC3; replication factor C subunit 3 isoform X1 [KO:K10756]
129012605  MLH3; DNA mismatch repair protein Mlh3 isoform X1 [KO:K08739]
129018266  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
129019462  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
129020494  POLD1; DNA polymerase delta catalytic subunit isoform X3 [KO:K02327] [EC:2.7.7.7]
129021903  PCNA; proliferating cell nuclear antigen [KO:K04802]
129023935  RPA4; replication protein A 30 kDa subunit [KO:K10741]
129024803  MSH6; DNA mismatch repair protein Msh6 isoform X1 [KO:K08737]
129030137  MSH2; DNA mismatch repair protein Msh2 isoform X1 [KO:K08735]
129031985  EXO1; exonuclease 1 isoform X1 [KO:K10746] [EC:3.1.-.-]
129032586  RFC4; replication factor C subunit 4 isoform X1 [KO:K10755]
129033112  MLH1; DNA mismatch repair protein Mlh1 isoform X2 [KO:K08734]
129035828  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
129037552  MSH3; DNA mismatch repair protein Msh3 isoform X1 [KO:K08736]
129040013  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X1 [KO:K03111]
129040224  RFC2; replication factor C subunit 2 isoform X1 [KO:K10755]
129040341  POLD2; DNA polymerase delta subunit 2 isoform X2 [KO:K02328]
129041031  PMS2; mismatch repair endonuclease PMS2 isoform X4 [KO:K10858]
129041227  RPA3; replication protein A 14 kDa subunit [KO:K10740]
129042402  RPA2; replication protein A 32 kDa subunit [KO:K10739]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
Related
pathway
ppyg05210  Colorectal cancer
KO pathway
ko03430   

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