KEGG   PATHWAY: prop00030
Entry
prop00030                   Pathway                                
Name
Pentose phosphate pathway - Propionimicrobium sp. PCR01-08-3
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
prop00030  Pentose phosphate pathway
prop00030

Module
prop_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:prop00030]
prop_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:prop00030]
prop_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:prop00030]
Other DBs
GO: 0006098
Organism
Propionimicrobium sp. PCR01-08-3 [GN:prop]
Gene
QQ658_00055  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
QQ658_08720  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
QQ658_08730  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
QQ658_01460  beta-propeller fold lactonase family protein [KO:K07404] [EC:3.1.1.31]
QQ658_10235  beta-propeller fold lactonase family protein [KO:K07404] [EC:3.1.1.31]
QQ658_03685  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
QQ658_06085  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
QQ658_03785  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
QQ658_05290  transketolase C-terminal domain-containing protein [KO:K00615] [EC:2.2.1.1]
QQ658_05295  transketolase [KO:K00615] [EC:2.2.1.1]
QQ658_09825  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
QQ658_03735  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
QQ658_05300  RpiB/LacA/LacB family sugar-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
QQ658_10270  RpiB/LacA/LacB family sugar-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
QQ658_10395  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
QQ658_04805  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
QQ658_01410  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
QQ658_03815  PfkB family carbohydrate kinase [KO:K00852] [EC:2.7.1.15]
QQ658_10320  ribokinase [KO:K00852] [EC:2.7.1.15]
QQ658_05665  pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) [KO:K01835] [EC:5.4.2.2]
QQ658_01285  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
QQ658_13385  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
QQ658_00040  hypothetical protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
QQ658_14990  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
QQ658_01060  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
QQ658_06140  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
QQ658_04985  sugar kinase [KO:K00874] [EC:2.7.1.45]
QQ658_14995  sugar kinase [KO:K00874] [EC:2.7.1.45]
QQ658_13530  fructose bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
QQ658_02440  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
QQ658_12540  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
QQ658_09320  ATP-dependent 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
QQ658_07010  pyrophosphate--fructose-6-phosphate 1-phosphotransferase [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
prop00010  Glycolysis / Gluconeogenesis
prop00040  Pentose and glucuronate interconversions
prop00052  Galactose metabolism
prop00230  Purine metabolism
prop00240  Pyrimidine metabolism
prop00340  Histidine metabolism
prop00630  Glyoxylate and dicarboxylate metabolism
prop00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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