KEGG   PATHWAY: psed00020
Entry
psed00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Stutzerimonas frequens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psed00020  Citrate cycle (TCA cycle)
psed00020

Module
psed_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psed00020]
psed_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psed00020]
psed_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psed00020]
psed_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psed00020]
psed_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psed00020]
Other DBs
GO: 0006099
Organism
Stutzerimonas frequens [GN:psed]
Gene
DM292_10130  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DM292_10240  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DM292_09200  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DM292_07870  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DM292_07875  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DM292_10105  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DM292_10100  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
DM292_10095  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DM292_10085  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DM292_10090  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DM292_00525  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
DM292_04750  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
DM292_10115  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DM292_10110  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DM292_10125  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DM292_10120  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DM292_13540  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DM292_11160  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DM292_13760  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
DM292_17870  oadA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
DM292_17315  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DM292_00070  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DM292_08755  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DM292_08750  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
DM292_08745  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
DM292_00065  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psed00010  Glycolysis / Gluconeogenesis
psed00053  Ascorbate and aldarate metabolism
psed00061  Fatty acid biosynthesis
psed00071  Fatty acid degradation
psed00190  Oxidative phosphorylation
psed00220  Arginine biosynthesis
psed00250  Alanine, aspartate and glutamate metabolism
psed00280  Valine, leucine and isoleucine degradation
psed00350  Tyrosine metabolism
psed00470  D-Amino acid metabolism
psed00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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