KEGG   PATHWAY: pseh00630
Entry
pseh00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudonocardia sp. HH130629-09
Class
Metabolism; Carbohydrate metabolism
Pathway map
pseh00630  Glyoxylate and dicarboxylate metabolism
pseh00630

Module
pseh_M00012  Glyoxylate cycle [PATH:pseh00630]
pseh_M00621  Glycine cleavage system [PATH:pseh00630]
pseh_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pseh00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudonocardia sp. HH130629-09 [GN:pseh]
Gene
XF36_04505  Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
XF36_03235  Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
XF36_21645  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
XF36_07840  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
XF36_12780  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
XF36_23000  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
XF36_06800  malate synthase [KO:K01638] [EC:2.3.3.9]
XF36_15360  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
XF36_03835  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
XF36_03840  hypothetical protein [KO:K01647] [EC:2.3.3.1]
XF36_04490  citrate synthase [KO:K01647] [EC:2.3.3.1]
XF36_03220  citrate synthase [KO:K01647] [EC:2.3.3.1]
XF36_03250  citrate synthase [KO:K01647] [EC:2.3.3.1]
XF36_22120  hypothetical protein [KO:K01647] [EC:2.3.3.1]
XF36_22140  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
XF36_09205  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
XF36_20685  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
XF36_26190  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
XF36_19280  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
XF36_24800  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
XF36_06510  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
XF36_25965  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
XF36_22010  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
XF36_03815  3-oxoacyl-ACP synthase [KO:K00023] [EC:1.1.1.36]
XF36_19285  glyoxalase [KO:K05606] [EC:5.1.99.1]
XF36_19370  protein meaA [KO:K14447] [EC:5.4.99.63]
XF36_01865  acetyl-COA carboxylase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
XF36_01940  methylmalonyl-CoA carboxyltransferase [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
XF36_01935  acetyl-CoA carboxylase [KO:K27095]
XF36_10020  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
XF36_10025  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
XF36_06795  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
XF36_04740  FAD-linked oxidase [KO:K00104] [EC:1.1.99.14]
XF36_06790  dehydrogenase [KO:K11472] [EC:1.1.99.14]
XF36_06785  glycolate oxidase [KO:K11473] [EC:1.1.99.14]
XF36_23305  catalase [KO:K03781] [EC:1.11.1.6]
XF36_09415  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
XF36_14955  hypothetical protein [KO:K01091] [EC:3.1.3.18]
XF36_07780  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
XF36_08640  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
XF36_08720  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
XF36_26650  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
XF36_19450  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
XF36_10725  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
XF36_08800  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
XF36_10375  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
XF36_08770  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
XF36_10695  hypothetical protein [KO:K02437]
XF36_13175  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
XF36_13165  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
XF36_13170  tartronate semialdehyde reductase [KO:K00042] [EC:1.1.1.60]
XF36_13180  glycerate kinase [KO:K00865] [EC:2.7.1.165]
XF36_08840  hypothetical protein [KO:K00865] [EC:2.7.1.165]
XF36_21785  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
XF36_09795  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
XF36_02465  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
XF36_05700  cupin [KO:K01569] [EC:4.1.1.2]
XF36_16210  formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
XF36_24325  formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
XF36_22250  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
XF36_21095  formamidase [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pseh00010  Glycolysis / Gluconeogenesis
pseh00020  Citrate cycle (TCA cycle)
pseh00030  Pentose phosphate pathway
pseh00053  Ascorbate and aldarate metabolism
pseh00071  Fatty acid degradation
pseh00230  Purine metabolism
pseh00250  Alanine, aspartate and glutamate metabolism
pseh00260  Glycine, serine and threonine metabolism
pseh00620  Pyruvate metabolism
pseh00710  Carbon fixation by Calvin cycle
pseh00750  Vitamin B6 metabolism
pseh00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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