KEGG   PATHWAY: pses00020
Entry
pses00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas sp. StFLB209
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pses00020  Citrate cycle (TCA cycle)
pses00020

Module
pses_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pses00020]
pses_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pses00020]
pses_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pses00020]
pses_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pses00020]
pses_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pses00020]
Other DBs
GO: 0006099
Organism
Pseudomonas sp. StFLB209 [GN:pses]
Gene
PSCI_3832  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
PSCI_3669  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PSCI_5519  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PSCI_5413  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
PSCI_5414  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PSCI_3837  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PSCI_3838  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
PSCI_3839  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PSCI_3841  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
PSCI_3840  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
PSCI_1875  coenzyme A transferase PsecoA [KO:K18118] [EC:2.8.3.18]
PSCI_3835  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PSCI_3836  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PSCI_3833  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PSCI_3834  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
PSCI_2927  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
PSCI_0362  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PSCI_2805  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PSCI_1509  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PSCI_0801  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PSCI_4966  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PSCI_1832  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
PSCI_1833  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
PSCI_1416  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PSCI_2307  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
PSCI_2306  aceF; dihydrolipoamide acetyltransferase, E2 component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pses00010  Glycolysis / Gluconeogenesis
pses00053  Ascorbate and aldarate metabolism
pses00061  Fatty acid biosynthesis
pses00071  Fatty acid degradation
pses00190  Oxidative phosphorylation
pses00220  Arginine biosynthesis
pses00250  Alanine, aspartate and glutamate metabolism
pses00280  Valine, leucine and isoleucine degradation
pses00350  Tyrosine metabolism
pses00470  D-Amino acid metabolism
pses00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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