KEGG   PATHWAY: psyo00020
Entry
psyo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Psychrobacillus glaciei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
psyo00020  Citrate cycle (TCA cycle)
psyo00020

Module
psyo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:psyo00020]
psyo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:psyo00020]
psyo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:psyo00020]
psyo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:psyo00020]
psyo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:psyo00020]
Other DBs
GO: 0006099
Organism
Psychrobacillus glaciei [GN:psyo]
Gene
PB01_19590  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
PB01_13030  citrate synthase [KO:K01647] [EC:2.3.3.1]
PB01_09770  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PB01_13025  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PB01_08840  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PB01_08845  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PB01_11460  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PB01_19065  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PB01_05515  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PB01_10380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PB01_07025  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PB01_07030  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PB01_06585  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PB01_06580  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PB01_20235  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
PB01_12675  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PB01_12670  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PB01_12680  succinate dehydrogenase [KO:K00241]
PB01_16030  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PB01_18295  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PB01_13020  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PB01_01500  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PB01_05615  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PB01_13475  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
PB01_05500  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PB01_05505  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
PB01_05510  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
psyo00010  Glycolysis / Gluconeogenesis
psyo00061  Fatty acid biosynthesis
psyo00071  Fatty acid degradation
psyo00190  Oxidative phosphorylation
psyo00220  Arginine biosynthesis
psyo00250  Alanine, aspartate and glutamate metabolism
psyo00280  Valine, leucine and isoleucine degradation
psyo00350  Tyrosine metabolism
psyo00470  D-Amino acid metabolism
psyo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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