KEGG   PATHWAY: ptex03430
Entry
ptex03430                   Pathway                                
Name
Mismatch repair - Pseudonaja textilis (eastern brown snake)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ptex03430  Mismatch repair
ptex03430

Other DBs
GO: 0006298
Organism
Pseudonaja textilis (eastern brown snake) [GN:ptex]
Gene
113451732  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
113452693  mismatch repair endonuclease PMS2-like [KO:K10858]
113452698  mismatch repair endonuclease PMS2-like [KO:K10858]
113449511  MLH1; DNA mismatch repair protein Mlh1 [KO:K08734]
113433413  MSH6; DNA mismatch repair protein Msh6 isoform X1 [KO:K08737]
113433409  MSH2; DNA mismatch repair protein Msh2 [KO:K08735]
113448021  MSH3; DNA mismatch repair protein Msh3 [KO:K08736]
113443530  MLH3; DNA mismatch repair protein Mlh3 isoform X1 [KO:K08739]
113435789  RFC1; replication factor C subunit 1 [KO:K10754]
113439731  RFC4; replication factor C subunit 4 [KO:K10755]
113452423  replication factor C subunit 2-like [KO:K10755]
113452424  replication factor C subunit 2-like [KO:K10755]
113441724  RFC3; replication factor C subunit 3 [KO:K10756]
113448072  RFC5; replication factor C subunit 5 [KO:K10756]
113445809  PCNA; proliferating cell nuclear antigen [KO:K04802]
113439413  EXO1; exonuclease 1 [KO:K10746] [EC:3.1.-.-]
113450011  RPA1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
113437447  RPA2; replication protein A 32 kDa subunit [KO:K10739]
113440120  RPA3; replication protein A 14 kDa subunit [KO:K10740]
113442900  POLD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
113447730  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
113453011  POLD3; DNA polymerase delta subunit 3 [KO:K03504]
113453504  POLD4; LOW QUALITY PROTEIN: DNA polymerase delta subunit 4 [KO:K03505]
113448488  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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