KEGG   PATHWAY: pva00030
Entry
pva00030                    Pathway                                
Name
Pentose phosphate pathway - Pantoea vagans C9-1
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pva00030  Pentose phosphate pathway
pva00030

Module
pva_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:pva00030]
pva_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pva00030]
pva_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:pva00030]
pva_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:pva00030]
pva_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:pva00030]
pva_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:pva00030]
Other DBs
GO: 0006098
Organism
Pantoea vagans C9-1 [GN:pva]
Gene
Pvag_0043  rbsk1; putative carbohydrate kinase [KO:K00852] [EC:2.7.1.15]
Pvag_0067  talB; transaldolase B [KO:K00616] [EC:2.2.1.2]
Pvag_0529  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
Pvag_0586  ybhE; putative isomerase [KO:K07404] [EC:3.1.1.31]
Pvag_1004  tktB; putative N-terminal region of transketolase [KO:K00615] [EC:2.2.1.1]
Pvag_1005  tkt1; C-terminal region of transketolase [KO:K00615] [EC:2.2.1.1]
Pvag_1070  prsA; Phosphoribosylpyrophosphate synthetase [KO:K00948] [EC:2.7.6.1]
Pvag_1290  pfka1; putative 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Pvag_1293  fbaA; fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
Pvag_1328  gcd1; Glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
Pvag_1654  eda; 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Pvag_1655  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Pvag_1824  [KO:K07404] [EC:3.1.1.31]
Pvag_1844  phnN; phosphonate metabolism protein phnN [KO:K05774] [EC:2.7.4.23]
Pvag_1962  gnd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Pvag_2218  talA; transaldolase A [KO:K00616] [EC:2.2.1.2]
Pvag_2219  tktA; Transketolase [KO:K00615] [EC:2.2.1.1]
Pvag_2539  rpiA; ribosephosphate isomerase [KO:K01807] [EC:5.3.1.6]
Pvag_2544  fba; fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
Pvag_2548  tkt3; Transketolase [KO:K00615] [EC:2.2.1.1]
Pvag_2602  deoB; Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
Pvag_2604  deoC; 2-deoxyribose-5-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
Pvag_2760  fbp; fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Pvag_2934  rpe; D-ribulose-5-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Pvag_2989  gntK; putative gluconokinase [KO:K00851] [EC:2.7.1.12]
Pvag_3096  ptk; putative phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
Pvag_3153  glpX; Fructose-1,6-bisphosphatase class II glpX [KO:K02446] [EC:3.1.3.11]
Pvag_3162  pfka3; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Pvag_3240  rbsk3; ribokinase, rbsK [KO:K00852] [EC:2.7.1.15]
Pvag_3290  kdgk1; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
Pvag_3292  yiaE; 2-ketogluconate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Pvag_3373  kdgk3; ketodeoxygluconokinase [KO:K00874] [EC:2.7.1.45]
Pvag_3498  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Pvag_3559  [KO:K06152] [EC:1.1.99.3]
Pvag_3560  [KO:K06151] [EC:1.1.99.3]
Pvag_3575  gcd3; Glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
Pvag_3732  rbsk5; putative ribokinase [KO:K00852] [EC:2.7.1.15]
Pvag_3737  [KO:K06152] [EC:1.1.99.3]
Pvag_3738  [KO:K06151] [EC:1.1.99.3]
Pvag_3765  cbbA; fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
Pvag_pPag30034  hfr; putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Pvag_pPag30134  [KO:K00034] [EC:1.1.1.47]
Pvag_pPag30408  [KO:K01053] [EC:3.1.1.17]
Pvag_pPag30527  [KO:K00615] [EC:2.2.1.1]
Pvag_pPag30528  [KO:K00615] [EC:2.2.1.1]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
pva00010  Glycolysis / Gluconeogenesis
pva00040  Pentose and glucuronate interconversions
pva00052  Galactose metabolism
pva00230  Purine metabolism
pva00240  Pyrimidine metabolism
pva00340  Histidine metabolism
pva00630  Glyoxylate and dicarboxylate metabolism
pva00750  Vitamin B6 metabolism
KO pathway
ko00030   

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