KEGG   PATHWAY: pvk00630
Entry
pvk00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Pseudomonas viciae
Class
Metabolism; Carbohydrate metabolism
Pathway map
pvk00630  Glyoxylate and dicarboxylate metabolism
pvk00630

Module
pvk_M00621  Glycine cleavage system [PATH:pvk00630]
Other DBs
GO: 0046487 0043648
Organism
Pseudomonas viciae [GN:pvk]
Gene
EPZ47_18210  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
EPZ47_14475  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
EPZ47_22895  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
EPZ47_25265  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
EPZ47_27350  malate synthase G [KO:K01638] [EC:2.3.3.9]
EPZ47_21005  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
EPZ47_09425  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EPZ47_12500  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EPZ47_10345  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EPZ47_14485  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
EPZ47_20265  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EPZ47_03295  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
EPZ47_06710  MaoC family dehydratase [KO:K17865] [EC:4.2.1.55]
EPZ47_25845  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
EPZ47_17160  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
EPZ47_17165  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
EPZ47_17170  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
EPZ47_09990  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
EPZ47_25675  catalase [KO:K03781] [EC:1.11.1.6]
EPZ47_26640  catalase [KO:K03781] [EC:1.11.1.6]
EPZ47_00135  catalase HPII [KO:K03781] [EC:1.11.1.6]
EPZ47_17800  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
EPZ47_04840  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
EPZ47_24675  2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
EPZ47_20535  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
EPZ47_27015  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
EPZ47_29330  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
EPZ47_07400  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EPZ47_10085  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EPZ47_11990  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
EPZ47_22760  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EPZ47_28330  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EPZ47_28340  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
EPZ47_01685  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
EPZ47_25620  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
EPZ47_27485  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
EPZ47_23365  gcvP; glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
EPZ47_12025  DUF1989 domain-containing protein [KO:K00605] [EC:2.1.2.10]
EPZ47_12040  aminomethyl transferase family protein [KO:K00605] [EC:2.1.2.10]
EPZ47_23375  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
EPZ47_28460  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
EPZ47_12080  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EPZ47_20970  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EPZ47_29735  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EPZ47_23360  gcvH; glycine cleavage system protein GcvH [KO:K02437]
EPZ47_28455  gcvH; glycine cleavage system protein GcvH [KO:K02437]
EPZ47_21050  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
EPZ47_11270  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
EPZ47_21055  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
EPZ47_21060  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
EPZ47_11870  glycerate kinase [KO:K00865] [EC:2.7.1.165]
EPZ47_21065  glycerate kinase [KO:K11529] [EC:2.7.1.165]
EPZ47_10915  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
EPZ47_17815  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
EPZ47_06675  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
EPZ47_16580  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
EPZ47_16585  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
EPZ47_16590  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
EPZ47_16595  formate dehydrogenase subunit gamma [KO:K00127]
EPZ47_11980  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
EPZ47_12035  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
EPZ47_23640  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
EPZ47_27460  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
EPZ47_01810  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pvk00010  Glycolysis / Gluconeogenesis
pvk00020  Citrate cycle (TCA cycle)
pvk00030  Pentose phosphate pathway
pvk00053  Ascorbate and aldarate metabolism
pvk00071  Fatty acid degradation
pvk00230  Purine metabolism
pvk00250  Alanine, aspartate and glutamate metabolism
pvk00260  Glycine, serine and threonine metabolism
pvk00620  Pyruvate metabolism
pvk00710  Carbon fixation by Calvin cycle
pvk00750  Vitamin B6 metabolism
pvk00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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