KEGG   PATHWAY: pvp00515
Entry
pvp00515                    Pathway                                
Name
Mannose type O-glycan biosynthesis - Pteropus vampyrus (large flying fox)
Description
Biosynthesis of mammalian O-mannosyl glycans is initiated by the transfer of mannose from mannose-P-Dol to serine or threonine residue, followed by extensions with N-acetylglucosamine (GlcNAc) and galactose (Gal) to generate core M1, M2 and M3 glycans. Core M1 and M2 glycans can then be further attached by fucose residues, sialic acid terminals and sulfatded glucuroinc acid terminals. Core M3 glycan is involved in the synthesis of alpha-dystroglycan, a heavily glycosylated protein found in muscle and brain tissues. Core M3 glycan contains a tandem repeat of ribitol 5-phosphate (Rbo5P) and -alpha3-GlcA-beta3-Xyl- repeating structures. Defects of genes encoding core glycans and modified core M3 glycans are associated with various congenital diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
pvp00515  Mannose type O-glycan biosynthesis
pvp00515

Other DBs
GO: 0035269
Organism
Pteropus vampyrus (large flying fox) [GN:pvp]
Gene
105290010  LARGE2; LARGE xylosyl- and glucuronyltransferase 2 isoform X8 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
105290092  POMT2; protein O-mannosyl-transferase 2 isoform X1 [KO:K00728] [EC:2.4.1.109]
105290309  POMGNT2; protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 [KO:K18207] [EC:2.4.1.312]
105292511  FUT9; alpha-(1,3)-fucosyltransferase 9 isoform X1 [KO:K03663] [EC:2.4.1.152]
105292800  B3GAT2; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 isoform X1 [KO:K10157] [EC:2.4.1.135]
105293440  MGAT5B; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B [KO:K09661] [EC:2.4.1.-]
105293957  ISPD; D-ribitol-5-phosphate cytidylyltransferase [KO:K21031] [EC:2.7.7.40]
105295339  FKTN; fukutin isoform X1 [KO:K19872] [EC:2.7.8.-]
105297095  ST3GAL3; CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X1 [KO:K00781] [EC:2.4.3.6]
105297100  B4GALT2; beta-1,4-galactosyltransferase 2 isoform X1 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
105297142  POMGNT1; protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1 [KO:K09666] [EC:2.4.1.-]
105297319  FKRP; fukutin-related protein [KO:K19873] [EC:2.7.8.-]
105297941  B4GAT1; beta-1,4-glucuronyltransferase 1 isoform X1 [KO:K21032] [EC:2.4.1.-]
105298684  POMT1; protein O-mannosyl-transferase 1 [KO:K00728] [EC:2.4.1.109]
105300659  POMK; protein O-mannose kinase isoform X1 [KO:K17547] [EC:2.7.1.183]
105301072  RXYLT1; UDP-D-xylose:ribitol-5-phosphate beta1,4-xylosyltransferase isoform X2 [KO:K21052] [EC:2.4.2.61]
105301907  FUT4; LOW QUALITY PROTEIN: alpha-(1,3)-fucosyltransferase 4 [KO:K07632] [EC:2.4.1.-]
105302726  B3GALNT2; UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2 [KO:K09654] [EC:2.4.1.313]
105306174  B3GAT1; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 [KO:K00735] [EC:2.4.1.135]
105306412  B4GALT1; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
105308027  CHST10; carbohydrate sulfotransferase 10 isoform X1 [KO:K09674] [EC:2.8.2.-]
105311148  LARGE1; LARGE xylosyl- and glucuronyltransferase 1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
Compound
C00063  CTP
C00789  CDP-ribitol
C01068  D-Ribitol 5-phosphate
C02189  [Protein]-L-serine
G10617  Dolichyl phosphate D-mannose
G13026  
G13027  
G13028  
G13082  
G13083  
G13084  O-Mannose core M1
G13085  
G13086  O-Mannose core M2
G13087  
G13088  
G13089  
G13090  
G13091  O-mannose core M3
G13092  Phospho-core M3
G13093  
G13094  
G13095  
G13096  
G13097  
G13098  
G13099  
G13100  
Reference
  Authors
Praissman JL, Wells L
  Title
Mammalian O-mannosylation pathway: glycan structures, enzymes, and protein substrates.
  Journal
Biochemistry 53:3066-78 (2014)
DOI:10.1021/bi500153y
Reference
  Authors
Stalnaker SH, Stuart R, Wells L
  Title
Mammalian O-mannosylation: unsolved questions of structure/function.
  Journal
Curr Opin Struct Biol 21:603-9 (2011)
DOI:10.1016/j.sbi.2011.09.001
Reference
  Authors
Kanagawa M, Kobayashi K, Tajiri M, Manya H, Kuga A, Yamaguchi Y, Akasaka-Manya K, Furukawa J, Mizuno M, Kawakami H, Shinohara Y, Wada Y, Endo T, Toda T
  Title
Identification of a Post-translational Modification with Ribitol-Phosphate and Its Defect in Muscular Dystrophy.
  Journal
Cell Rep 14:2209-23 (2016)
DOI:10.1016/j.celrep.2016.02.017
Reference
  Authors
Manya H, Yamaguchi Y, Kanagawa M, Kobayashi K, Tajiri M, Akasaka-Manya K, Kawakami H, Mizuno M, Wada Y, Toda T, Endo T
  Title
The Muscular Dystrophy Gene TMEM5 Encodes a Ribitol beta1,4-Xylosyltransferase Required for the Functional Glycosylation of Dystroglycan.
  Journal
J Biol Chem 291:24618-24627 (2016)
DOI:10.1074/jbc.M116.751917
Related
pathway
pvp00510  N-Glycan biosynthesis
KO pathway
ko00515   

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