KEGG   PATHWAY: pym00010
Entry
pym00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Pseudomonas yamanorum
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pym00010  Glycolysis / Gluconeogenesis
pym00010

Module
pym_M00002  Glycolysis, core module involving three-carbon compounds [PATH:pym00010]
pym_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pym00010]
pym_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pym00010]
Other DBs
GO: 0006096 0006094
Organism
Pseudomonas yamanorum [GN:pym]
Gene
AK972_1061  Glucokinase [KO:K00845] [EC:2.7.1.2]
AK972_5137  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
AK972_5565  Fructose-1,6-bisphosphatase, type I [KO:K03841] [EC:3.1.3.11]
AK972_0231  Fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
AK972_5151  Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
AK972_4230  NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
AK972_1059  NAD-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
AK972_0228  Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
AK972_5583  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
AK972_4701  Enolase [KO:K01689] [EC:4.2.1.11]
AK972_1551  Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
AK972_1075  Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
AK972_4327  Phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
AK972_5455  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AK972_2513  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AK972_1868  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AK972_5456  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
AK972_1581  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
AK972_1819  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
AK972_4696  S-(hydroxymethyl)glutathione dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
AK972_4564  Alcohol dehydrogenase [KO:K13954] [EC:1.1.1.1]
AK972_3470  Alcohol dehydrogenase [KO:K13954] [EC:1.1.1.1]
AK972_1398  Alcohol dehydrogenase [KO:K13979] [EC:1.1.1.2]
AK972_2196  Alcohol dehydrogenase [KO:K13979] [EC:1.1.1.2]
AK972_3915  Putative diheme cytochrome c-553 [KO:K22474] [EC:1.1.5.5]
AK972_5878  Gluconate 2-dehydrogenase, membrane-bound, cytochrome c [KO:K22474] [EC:1.1.5.5]
AK972_1743  Aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
AK972_1748  Aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
AK972_0485  Aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
AK972_2815  Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase [KO:K01895] [EC:6.2.1.1]
AK972_1286  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
AK972_5138  Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
AK972_2094  Acetyl-CoA synthetase (ADP-forming) alpha and beta chain, putative [KO:K24012] [EC:6.2.1.13]
AK972_2893  L-arabinose-specific 1-epimerase (mutarotase) [KO:K01785] [EC:5.1.3.3]
AK972_1834  Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
AK972_2983  Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
AK972_6090  Phosphomannomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
AK972_6027  Aldose 1-epimerase [KO:K01792] [EC:5.1.3.15]
AK972_1950  Glyceraldehyde-3-phosphate dehydrogenase, putative [KO:K00131] [EC:1.2.1.9]
AK972_5680  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pym00020  Citrate cycle (TCA cycle)
pym00030  Pentose phosphate pathway
pym00500  Starch and sucrose metabolism
pym00620  Pyruvate metabolism
pym00640  Propanoate metabolism
pym00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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