KEGG   PATHWAY: ram00020
Entry
ram00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rickettsia amblyommatis GAT-30V
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ram00020  Citrate cycle (TCA cycle)
ram00020

Module
ram_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ram00020]
ram_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ram00020]
ram_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ram00020]
ram_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ram00020]
Other DBs
GO: 0006099
Organism
Rickettsia amblyommatis GAT-30V [GN:ram]
Gene
MCE_00120  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
MCE_00990  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MCE_01480  [KO:K00241]
MCE_01485  [KO:K00242]
MCE_01490  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MCE_01835  [KO:K00658] [EC:2.3.1.61]
MCE_01840  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MCE_02435  [KO:K00161] [EC:1.2.4.1]
MCE_02440  [KO:K00162] [EC:1.2.4.1]
MCE_02460  [KO:K00031] [EC:1.1.1.42]
MCE_03470  [KO:K00024] [EC:1.1.1.37]
MCE_03875  [KO:K01902] [EC:6.2.1.5]
MCE_03880  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
MCE_04445  [KO:K00627] [EC:2.3.1.12]
MCE_05475  [KO:K00382] [EC:1.8.1.4]
MCE_06610  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MCE_07765  [KO:K27802]
MCE_07795  [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ram00010  Glycolysis / Gluconeogenesis
ram00061  Fatty acid biosynthesis
ram00071  Fatty acid degradation
ram00190  Oxidative phosphorylation
ram00220  Arginine biosynthesis
ram00250  Alanine, aspartate and glutamate metabolism
ram00280  Valine, leucine and isoleucine degradation
ram00350  Tyrosine metabolism
ram00470  D-Amino acid metabolism
ram00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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