KEGG   PATHWAY: rlg00020
Entry
rlg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium leguminosarum bv. trifolii WSM1325
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rlg00020  Citrate cycle (TCA cycle)
rlg00020

Module
rlg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rlg00020]
rlg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rlg00020]
rlg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rlg00020]
rlg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rlg00020]
Other DBs
GO: 0006099
Organism
Rhizobium leguminosarum bv. trifolii WSM1325 [GN:rlg]
Gene
Rleg_1789  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Rleg_2026  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Rleg_2027  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Rleg_4061  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Rleg_2164  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Rleg_3970  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Rleg_3968  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Rleg_1801  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rleg_3964  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rleg_6500  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rleg_3971  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Rleg_3973  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Rleg_3978  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Rleg_3977  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Rleg_3980  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Rleg_3979  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Rleg_5889  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Rleg_5819  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Rleg_2239  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Rleg_2237  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Rleg_3974  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Rleg_4167  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Rleg_4297  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Rleg_1796  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Rleg_1797  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Rleg_1798  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rlg00010  Glycolysis / Gluconeogenesis
rlg00053  Ascorbate and aldarate metabolism
rlg00061  Fatty acid biosynthesis
rlg00071  Fatty acid degradation
rlg00190  Oxidative phosphorylation
rlg00220  Arginine biosynthesis
rlg00250  Alanine, aspartate and glutamate metabolism
rlg00280  Valine, leucine and isoleucine degradation
rlg00350  Tyrosine metabolism
rlg00470  D-Amino acid metabolism
rlg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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