KEGG   PATHWAY: rmuc00020
Entry
rmuc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Roseomonas mucosa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rmuc00020  Citrate cycle (TCA cycle)
rmuc00020

Module
rmuc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rmuc00020]
rmuc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rmuc00020]
rmuc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rmuc00020]
rmuc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rmuc00020]
rmuc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rmuc00020]
Other DBs
GO: 0006099
Organism
Roseomonas mucosa [GN:rmuc]
Gene
FOB66_13770  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FOB66_02790  hypothetical protein [KO:K01647] [EC:2.3.3.1]
FOB66_07755  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FOB66_14865  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FOB66_04485  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FOB66_04490  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FOB66_04535  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FOB66_10225  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FOB66_04480  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FOB66_04475  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FOB66_04410  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FOB66_04405  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FOB66_04420  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
FOB66_04415  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FOB66_14515  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FOB66_02090  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FOB66_04470  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FOB66_19265  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FOB66_10200  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FOB66_10205  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FOB66_10210  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rmuc00010  Glycolysis / Gluconeogenesis
rmuc00053  Ascorbate and aldarate metabolism
rmuc00061  Fatty acid biosynthesis
rmuc00062  Fatty acid elongation
rmuc00071  Fatty acid degradation
rmuc00190  Oxidative phosphorylation
rmuc00220  Arginine biosynthesis
rmuc00250  Alanine, aspartate and glutamate metabolism
rmuc00280  Valine, leucine and isoleucine degradation
rmuc00350  Tyrosine metabolism
rmuc00470  D-Amino acid metabolism
rmuc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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