KEGG   PATHWAY: roa00030
Entry
roa00030                    Pathway                                
Name
Pentose phosphate pathway - Rhodococcus opacus PD630
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
roa00030  Pentose phosphate pathway
roa00030

Module
roa_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:roa00030]
roa_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:roa00030]
roa_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:roa00030]
roa_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:roa00030]
roa_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:roa00030]
roa_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:roa00030]
roa_M00580  Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:roa00030]
Other DBs
GO: 0006098
Organism
Rhodococcus opacus PD630 [GN:roa]
Gene
Pd630_LPD02164  Glucose-6-phosphate isomerase 1 [KO:K01810] [EC:5.3.1.9]
Pd630_LPD03931  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Pd630_LPD06564  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Pd630_LPD04597  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Pd630_LPD02242  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Pd630_LPD03929  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
Pd630_LPD04598  Putative 6-phosphogluconate dehydrogenase YqeC [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Pd630_LPD03995  6-phosphogluconate dehydrogenase, decarboxylating 2 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Pd630_LPD00003  Putative 6-phosphogluconate dehydrogenase YqeC [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Pd630_LPD14022  6-phosphogluconate dehydrogenase, decarboxylating 2 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Pd630_LPD03914  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Pd630_LPD03933  Transketolase [KO:K00615] [EC:2.2.1.1]
Pd630_LPD04898  transketolase [KO:K00615] [EC:2.2.1.1]
Pd630_LPD04899  transketolase [KO:K00615] [EC:2.2.1.1]
Pd630_LPD00193  Putative uncharacterized transketolase family protein y4mO [KO:K00615] [EC:2.2.1.1]
Pd630_LPD00194  Putative uncharacterized transketolase family protein y4mN [KO:K00615] [EC:2.2.1.1]
Pd630_LPD14029  Transketolase [KO:K00615] [EC:2.2.1.1]
Pd630_LPD03932  Transaldolase [KO:K00616] [EC:2.2.1.2]
Pd630_LPD14028  Transaldolase [KO:K00616] [EC:2.2.1.2]
Pd630_LPD01863  Ribose-5-phosphate isomerase A 2 [KO:K01807] [EC:5.3.1.6]
Pd630_LPD05496  Ribose-5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
Pd630_LPD04589  3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
Pd630_LPD04588  3-hexulose-6-phosphate isomerase [KO:K08094] [EC:5.3.1.27]
Pd630_LPD05623  putative phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
Pd630_LPD06273  Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
Pd630_LPD05407  Ribokinase [KO:K00852] [EC:2.7.1.15]
Pd630_LPD03080  Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
Pd630_LPD02340  Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Pd630_LPD06563  Phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
Pd630_LPD06882  KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Pd630_LPD06562  KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Pd630_LPD06691  Putative KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Pd630_LPD07055  Adipocyte plasma membrane-associated protein [KO:K01053] [EC:3.1.1.17]
Pd630_LPD06557  putative gluconokinase [KO:K00851] [EC:2.7.1.12]
Pd630_LPD07557  Thermosensitive gluconokinase [KO:K00851] [EC:2.7.1.12]
Pd630_LPD14023  putative gluconokinase [KO:K00851] [EC:2.7.1.12]
Pd630_LPD06688  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
Pd630_LPD06881  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
Pd630_LPD02120  Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
Pd630_LPD01893  Uncharacterized protein ydjI [KO:K01624] [EC:4.1.2.13]
Pd630_LPD02492  Fructose-1,6-bisphosphatase class 2 [KO:K02446] [EC:3.1.3.11]
Pd630_LPD03144  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
roa00010  Glycolysis / Gluconeogenesis
roa00040  Pentose and glucuronate interconversions
roa00052  Galactose metabolism
roa00230  Purine metabolism
roa00240  Pyrimidine metabolism
roa00340  Histidine metabolism
roa00630  Glyoxylate and dicarboxylate metabolism
roa00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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