KEGG   PATHWAY: rros00020
Entry
rros00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium rosettiformans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rros00020  Citrate cycle (TCA cycle)
rros00020

Module
rros_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rros00020]
rros_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rros00020]
rros_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rros00020]
rros_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rros00020]
Other DBs
GO: 0006099
Organism
Rhizobium rosettiformans [GN:rros]
Gene
D4A92_03090  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
D4A92_17110  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
D4A92_05790  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
D4A92_18390  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
D4A92_04760  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
D4A92_04755  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
D4A92_03170  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D4A92_04735  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D4A92_17175  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D4A92_04765  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
D4A92_04770  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
D4A92_04795  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
D4A92_04790  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
D4A92_04805  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
D4A92_04800  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
D4A92_18625  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
D4A92_18615  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
D4A92_04775  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
D4A92_05120  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
D4A92_06165  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
D4A92_17150  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
D4A92_17155  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
D4A92_17160  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rros00010  Glycolysis / Gluconeogenesis
rros00053  Ascorbate and aldarate metabolism
rros00061  Fatty acid biosynthesis
rros00071  Fatty acid degradation
rros00190  Oxidative phosphorylation
rros00220  Arginine biosynthesis
rros00250  Alanine, aspartate and glutamate metabolism
rros00280  Valine, leucine and isoleucine degradation
rros00350  Tyrosine metabolism
rros00470  D-Amino acid metabolism
rros00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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