KEGG   PATHWAY: sbin00020
Entry
sbin00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingomonas bisphenolicum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sbin00020  Citrate cycle (TCA cycle)
sbin00020

Module
sbin_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sbin00020]
sbin_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sbin00020]
sbin_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sbin00020]
sbin_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sbin00020]
sbin_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sbin00020]
Other DBs
GO: 0006099
Organism
Sphingomonas bisphenolicum [GN:sbin]
Gene
SBA_ch1_07790  [KO:K01676] [EC:4.2.1.2]
SBA_ch1_11030  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SBA_ch1_13650  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
SBA_ch1_13660  [KO:K00242]
SBA_ch1_13670  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SBA_ch1_14810  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
SBA_ch1_17030  [KO:K00031] [EC:1.1.1.42]
SBA_ch1_18090  acnB; aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SBA_ch1_18100  [KO:K27802]
SBA_ch1_22990  cisY; citrate synthase [KO:K01647] [EC:2.3.3.1]
SBA_ch1_26220  [KO:K00382] [EC:1.8.1.4]
SBA_ch1_26240  pdhB_2; acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
SBA_ch1_30140  pdhAb; pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
SBA_ch1_30150  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
SBA_ch1_33690  [KO:K00382] [EC:1.8.1.4]
SBA_ch1_33700  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SBA_ch1_33710  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
SBA_ch1_33720  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
SBA_ch1_33730  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SBA_ch1_33760  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SBA_ch1_34040  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sbin00010  Glycolysis / Gluconeogenesis
sbin00053  Ascorbate and aldarate metabolism
sbin00061  Fatty acid biosynthesis
sbin00071  Fatty acid degradation
sbin00190  Oxidative phosphorylation
sbin00220  Arginine biosynthesis
sbin00250  Alanine, aspartate and glutamate metabolism
sbin00280  Valine, leucine and isoleucine degradation
sbin00350  Tyrosine metabolism
sbin00470  D-Amino acid metabolism
sbin00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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