KEGG   PATHWAY: schu00020
Entry
schu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Siniperca chuatsi (mandarin fish)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
schu00020  Citrate cycle (TCA cycle)
schu00020

Module
schu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:schu00020]
schu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:schu00020]
schu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:schu00020]
Other DBs
GO: 0006099
Organism
Siniperca chuatsi (mandarin fish) [GN:schu]
Gene
122861734  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122862098  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
122862415  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
122863401  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
122863580  [KO:K00658] [EC:2.3.1.61]
122865970  ogdhb; 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
122866394  pdha1b; pyruvate dehydrogenase E1 subunit alpha 1b isoform X1 [KO:K00161] [EC:1.2.4.1]
122866816  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
122867183  aclyb; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
122867776  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
122868742  aclya; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
122868891  [KO:K01681] [EC:4.2.1.3]
122870365  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
122870500  [KO:K01958] [EC:6.4.1.1]
122873126  [KO:K00025] [EC:1.1.1.37]
122874327  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
122874369  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
122874794  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
122876321  [KO:K00030] [EC:1.1.1.41]
122876761  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
122877830  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
122879530  [KO:K00237]
122881022  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
122881053  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
122882574  [KO:K00030] [EC:1.1.1.41]
122882798  [KO:K00235] [EC:1.3.5.1]
122882864  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
122883038  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
122883660  cs; citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
122884164  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
122884204  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
122884306  [KO:K00031] [EC:1.1.1.42]
122884365  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
122885127  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122885760  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
122887467  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
122887869  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
122887918  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a [KO:K00161] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
schu00010  Glycolysis / Gluconeogenesis
schu00053  Ascorbate and aldarate metabolism
schu00061  Fatty acid biosynthesis
schu00062  Fatty acid elongation
schu00071  Fatty acid degradation
schu00190  Oxidative phosphorylation
schu00220  Arginine biosynthesis
schu00250  Alanine, aspartate and glutamate metabolism
schu00280  Valine, leucine and isoleucine degradation
schu00350  Tyrosine metabolism
schu00470  D-Amino acid metabolism
schu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system